Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00595 ATGGCGACACCATCGTTGGACGAAGAAACCGCTAAGAAAGTGATACGACAAGTTGAGTTCTACTTCAGTGACAGCAACCTTCCCAGGGACAATTTTCTCAAGAAATGTATTGATGAAAGTGGAGATGGCCTGGTTAGGTTGGCTTTGATTTGTTCTTTTACTCGGATGAGAAAACATCTTAATCTGGACGACGTTAAGCCGGATGAAGTCCCCGAAGTTACCGTGAAAGCTGTTGCTGAGACTTTGAGGAAATCAGAATCCCTTAAGATCTCCGAGGATGGTAAAAAAGTTGGTAGGACAACTGAACTTCTGAAACCAGAAGAGGTAATTGAGCAGGTGGACACCAGAACAATGGCTGCATCACCATTTGAATATGATGTGAAGCGAGAAGATATAGAAGCGTTCTTTGGTCAATCTGCTAAGGTTAATAGTGTCAGACTTCCTCGTCATGTTGGAGACAAAAGGTTCTTCTGTGGCTCTGCGCTCATTGAGTTCGCAGCAGAAGAAGATGTTGAGAAAGTTTTGGGGCAAAAATTGGTCTTTGCAGGAGCCGAGTTAGAATTGAAGTTGAAGAAAGACTTTGATGCAGAGAGAGCAAAGGAGTTAGAAGAGTATGAAAAGTCTGGTGCACGTAATGGTTCAAATCACCAGAATAACTTAAATGCTGAAGCAGGCTATCCCAAGGGCTTAATTATTTCCTTCAAGCTAAAACACATTTCAGATGATGTTCCTCCAAAACAAAATGGTGCTCATCAAGAAGCCGATGGCAACAGTAGAGTCTTTGACAAAGATGAACAAAATCCCTCGGAGGGTGTCGTTGAGGTTAATGAACAAAAGTTATCAGATAATACTGAGAACGACAAAGAACAAGAAGTCAGTGGTGTTGTTGAGGTTAATGAACAAAAGGTATCAGATAATACCGATAACGACAAAGAACAAGAAGTCAGTGAAGGAAATGAAACTAAAGGTGAAGAAAAGATTCAAGAAAGTGAAGTAAAACTTTCAGCCCGTGCTTACAGGGACAACATGGACGTTGTGTTACGTGAGGATTTGAAAGAAGTGTTTGAGAGGTTTGGTTCTGTGAAGTTTGTTGATTTCAAGATTGGAGCAGATTCTGGATACATCCGCTTTGAAGAACCTGAAGCAGCTCAAAAAGCTCGCGCTGCCGCAGTTCTTGCTGAAGAGGGGGGTCTGGCTGTGAAGAATTTTAATGCTACTCTAGATCCAGTGTCTGGCGATGCTGAAAGGGAATACTGGAGCCTTCTCCGTGGTGATCAAGATAAGCGCCGAGACAGTAGGAACTCGAGAGGAAGGGGAGGAGGAAGGCGAGGCAGAGGGAGGAAACATGCCCGCTCTAGAGAGAATGAATCTCCAATGGGTCGCCCAAATAAAGCTCAAATTTCTCAAGGAATAATGAATAGTCATGTCTACTTTGGCTAA 1440 0.4299 MATPSLDEETAKKVIRQVEFYFSDSNLPRDNFLKKCIDESGDGLVRLALICSFTRMRKHLNLDDVKPDEVPEVTVKAVAETLRKSESLKISEDGKKVGRTTELLKPEEVIEQVDTRTMAASPFEYDVKREDIEAFFGQSAKVNSVRLPRHVGDKRFFCGSALIEFAAEEDVEKVLGQKLVFAGAELELKLKKDFDAERAKELEEYEKSGARNGSNHQNNLNAEAGYPKGLIISFKLKHISDDVPPKQNGAHQEADGNSRVFDKDEQNPSEGVVEVNEQKLSDNTENDKEQEVSGVVEVNEQKVSDNTDNDKEQEVSEGNETKGEEKIQESEVKLSARAYRDNMDVVLREDLKEVFERFGSVKFVDFKIGADSGYIRFEEPEAAQKARAAAVLAEEGGLAVKNFNATLDPVSGDAEREYWSLLRGDQDKRRDSRNSRGRGGGRRGRGRKHARSRENESPMGRPNKAQISQGIMNSHVYFG 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00595 479 Gene3D - 332 438 IPR012677 -
Accr3g00595 479 CDD LA_like_plant 10 99 - -
Accr3g00595 479 MobiDBLite consensus disorder prediction 280 295 - -
Accr3g00595 479 MobiDBLite consensus disorder prediction 459 473 - -
Accr3g00595 479 SUPERFAMILY "Winged helix" DNA-binding domain 6 105 IPR036390 -
Accr3g00595 479 ProSiteProfiles La-type HTH domain profile. 4 109 IPR006630 -
Accr3g00595 479 Pfam RNA binding motif 346 438 IPR014886 GO:0003723
Accr3g00595 479 Pfam La domain 14 84 IPR006630 -
Accr3g00595 479 MobiDBLite consensus disorder prediction 241 327 - -
Accr3g00595 479 PRINTS Lupus La protein signature 43 58 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Accr3g00595 479 PRINTS Lupus La protein signature 157 175 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Accr3g00595 479 PRINTS Lupus La protein signature 17 34 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Accr3g00595 479 MobiDBLite consensus disorder prediction 256 270 - -
Accr3g00595 479 MobiDBLite consensus disorder prediction 423 479 - -
Accr3g00595 479 SMART la 8 100 IPR006630 -
Accr3g00595 479 CDD RRM1_La 117 189 - -
Accr3g00595 479 ProSiteProfiles xRRM domain profile. 325 451 IPR014886 GO:0003723
Accr3g00595 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 201 IPR000504 GO:0003723
Accr3g00595 479 Gene3D - 106 200 IPR012677 -
Accr3g00595 479 SUPERFAMILY RNA-binding domain, RBD 348 437 IPR035979 GO:0003676
Accr3g00595 479 Gene3D - 2 104 IPR036388 -
Accr3g00595 479 MobiDBLite consensus disorder prediction 423 438 - -
Accr3g00595 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 176 IPR000504 GO:0003723
Accr3g00595 479 SUPERFAMILY RNA-binding domain, RBD 107 193 IPR035979 GO:0003676
Accr3g00595 479 FunFam La protein 2 6 106 - -
Accr3g00595 479 PANTHER LUPUS LA PROTEIN-RELATED 10 310 IPR045180 -
Accr3g00595 479 SMART rrm1_1 117 189 IPR000504 GO:0003723
Accr3g00595 479 SMART rrm1_1 337 401 IPR000504 GO:0003723
Accr3g00595 479 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00595 Accr-Chr3 6742923 6746462 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00595 K11090 - qsa:O6P43_019295 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00595 3 6742923 6746462 Accr3g00595 3 6742923 6746462 ECH