Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00396 ATGTCTGGTGGGGGATGTAGCATAGTGTGGTTCAGAAGAGATTTGAGGGTGGAGGATAATTCGGCCCTGACGGCGGGAATGAGAGCAGGAGCTGTGGTGGCGGTTTTTATATGGGCGCCTGAAGAAGAAGGTCAATACCAACCAGGAAGGGTTTCCAGGTGGTGGCTCAAACACAGTTTGGCTCACCTTGATTCTTCCTTGAGGAATCTTGGCATATCTCTAGTCACCAAGCGATCCACTGATTCTGTTTCTTCTCTCCTCGAGGTTATCAGCTCCACCGGTGCCTCTCAACTATTTTTTAACCACTTATACGATCCTCTTTCACTAATCAGGGATCACCGGGCCAAGGAGGTGCTGACTGCTCAGGGCATAGCCGTACGTTCCTTCAATGCAGATTTACTGTATGAACCATGGGATGTGAATCATACAGATGGCCAGCCATTCTCAACTTTTTATGCTTTTTGGGAAAGATGCCTTAGCATGCCTTGTGACCCCGAGGCACCTCTTCTGCCACCTAAAAGAATTATTGCAGGTGATGTATCGAGGTGCTCTTCTGATACACTGGTGCTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTCGCCCGAGCATGGTCACCTGGATGGAGCAATGCGGACAAGGCCCTGACTACGTTCATAAATGGCCCATTGATTGAGTATTCAAAAAATCGCAGGAAAGCCAACAGCGCCACAACCTCATTGCTTTCCCCACATCTGCACTTTGGAGAGTTGAGTGTGAAGAAGGTCTTCCATCTGGTCCGCATTAAGCAAGTTTTATGGGCCAATGAAGGGAACAAAGCTGGTGAAGAGAGTGTCAACTTGTTTCTCAAGTCTATTGGTTTGAGAGAGTATTCAAGGTACATCAGTTTCAACCATCCCTATTGTCATAAAAGGCCTATTCTGGGCCATCTCCGGTTCTTTCCATGGGTTGTAAATGAAAGCTACTTCAAGGCATGGAGACAAGGAAGAACTGGGTACCCCTTAGTGGATGCTGGGATGAGGGAATTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTTGTTTCCAGTTTCTTTGTGAAGGTTCTGCAGCTTCCCTGGAGATGGGGAATGAAATATTTTTGGGACACACTCTTAGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCCGGTACTCTCCCTGATGGCCGTGAATTTGACCAAATAGATAACCCACAGTTTCAGGGATACAAATTTGATCCAAATGGAGAATATGTACGACGTTGGCTTCCAGAACTTGCCAGAATACCCACCGAATGGATTCATCACCCATGGAACGCACCAGAACCTGTGCTACAAGCTGCTGGAATTGAACTGGGGTCAAATTACCCTCTTCCTATTGTTGGAATAGATGCTGCAAAAGCCAGATTGGAAGAAGCAATAACAGAAATGTGGCAACAAGAAGCGGCTTCAAGAGCCGCCATTGAAAATGGAACTGAAGAAGGACTGGGAGACTCCTTTGAAACAACCCCTATTGCCTTTCCTCAAGACATACAAATGGAGGAAAGTCATGAACCTGTTAGACACAATCCCCCTCCTGTTACTCACCGTTACGAGGACCAGATGGTCCCGAGCATCACTTCTTCCCTTTTGAGAGTGGAGGAGGAAGAAACTTCCTCAGATCTTCGAAACACGACAGGAGATAGCAGGGCTGAAGTGCCAGTCAATGTAAATGTACGTCAAAATGAGTTGGCAAGAGAAACATTGAACCAACGGATGTTGCAGGCTGCTCAAGGAAATGCCCAAGTACAGAATACTGCAGTGGAACTGAGAAATGATGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTAGTAGGAGAGAAAGGAATGGAGGTGTAGTTCCAGTATGGCCTCCTCTGGCTTCAAGTTACTCAGAACAAATTGTAGGAGATGAAAATGGCAGAGGAGCTAGTTCATCTTACTTGCAGAGGCATCCTCAATCTCACCAACTTATGAATTGGAGGCGGCTACCTCAGACTGGGTAA 2046 0.4673 MSGGGCSIVWFRRDLRVEDNSALTAGMRAGAVVAVFIWAPEEEGQYQPGRVSRWWLKHSLAHLDSSLRNLGISLVTKRSTDSVSSLLEVISSTGASQLFFNHLYDPLSLIRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNHTDGQPFSTFYAFWERCLSMPCDPEAPLLPPKRIIAGDVSRCSSDTLVLEDESEKASNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKANSATTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYCHKRPILGHLRFFPWVVNESYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDQIDNPQFQGYKFDPNGEYVRRWLPELARIPTEWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKARLEEAITEMWQQEAASRAAIENGTEEGLGDSFETTPIAFPQDIQMEESHEPVRHNPPPVTHRYEDQMVPSITSSLLRVEEEETSSDLRNTTGDSRAEVPVNVNVRQNELARETLNQRMLQAAQGNAQVQNTAVELRNDAEDSTAESSSSSRRERNGGVVPVWPPLASSYSEQIVGDENGRGASSSYLQRHPQSHQLMNWRRLPQTG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00396 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Accr3g00396 681 MobiDBLite consensus disorder prediction 549 573 - -
Accr3g00396 681 Coils Coil 600 620 - -
Accr3g00396 681 MobiDBLite consensus disorder prediction 646 681 - -
Accr3g00396 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Accr3g00396 681 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Accr3g00396 681 Coils Coil 470 490 - -
Accr3g00396 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Accr3g00396 681 Gene3D HUPs 8 206 IPR014729 -
Accr3g00396 681 Pfam DNA photolyase 7 161 IPR006050 -
Accr3g00396 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Accr3g00396 681 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Accr3g00396 681 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Accr3g00396 681 MobiDBLite consensus disorder prediction 612 681 - -
Accr3g00396 681 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Accr3g00396 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Accr3g00396 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 176 IPR036155 -
Accr3g00396 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Accr3g00396 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Accr3g00396 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Accr3g00396 681 Gene3D - 134 293 - -
Accr3g00396 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00396 Accr-Chr3 4392072 4395985 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00396 K12118 - gmx:100233233 1179.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00396 3 4392072 4395985 Accr3g00396 3 4392072 4395985 ECH