Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00335 ATGAGGGCTGCCTCTGAATCCTCTGTGGTTGAGAGATTAGATGATGGGGAAAAGGACAAGAAGAAGAAACGCCGATCCAATCGTCGATCCAAACAAACTTCTGCGTCCTCAGCATCTTGTAATTCAGGAAACGAGGCGCACGGGTTGGTATCAGAGTGCTCAGGAAACATCAGGACACCTATTCATGCCGATGCTTTGTTAAGTGACTCTTCATTGAGGCAGCAGGAGATCAAGATTTGTTCCCCTAATGAGCAAGGGCTGTCCACGGCAACAAATGTTTCTTTCACCTCAGTGCCACCATTGCATTTCAATGAGCATCAAATGGACCCTCCGGATTTGCAAACCATTCAGCGTAATGGTGGAGGTGTATGCTCAAAACCATGTTCAGAGCCGGTCGACTCATCAATAATTCATACAAACAAAGACCTGGTCCCTTCTGGTCAGACTGGGGTTTATGTTCAGAGAAATTATTATAGTCCACACTGGTCGATGGAAATTGTTGAGAAGGCTTTAGAGAAGGGGGATGTTTTTAAAGCCCTTTTTCGTGTCAATGCTCACAATAGACTTGAGGCATATTGTAAAATTGATGGAGTGCCAACTGATGTTCTTATTAGTGGAATTCACGCCCAGAATAGAGCTGTCGATGGTGATATTGTTGCAGTTAAGATAGATCCTTTGGCTTTGTGGACTAAAATGAAAGGATCAAATGGTACTGGCAATGTTACTGCACCTGTAGAATGTAGTAACTTGCTTACAGAAGATAATGAAGTGGAGGGGAATATATTGATGCAAGTAGGTAAGGTAGATGCTGATTCTGAGTTTGTTAATTACTGCAACTGCCCTGCTCAAGACAAAGAGGATGTTAATCATGGCCCCACTACTTATGGAAATAATCCTTATTTTGAAAAGAAAGGGCTAAATAATATTTATGCTTCTCCAGTTTCATCCAGCCCTTTAGATGCACTTGAACCAGTTACTCACGATGGTCATGATGCTGCTTCTGATAACTTAAGTATCAGTTCTTATGGTGCACAAGGTGAAGTTACTAATGCTGTGGAAAACATGTGCTCGTTGGTTAATTCTTTCCCTTCTAAAAGACCAACCGGCAGGGTGGTTGCAATTGTTGAGAGGTCTCCACGCCGAGAGTCCATAATTGGTCATCTCAATGTTAGGCCAGCATTTCCTTTAAGGGACATATGCAGAAAAGATGCAAAGAAGAACAAAAAAATGGTTTCTGGGTGTGAGTATATTCATTTTATGCCAACTGATCTGAAGTTTCCAAAAATGATGCTCCTTGTTAGAGATTTGCCTGATTCCATGAAGAAGAGGCTGCAAAGTGGGGATGCTACACTTGAAATGGATCTGGTAGCCGCACGAATTGATAACTGGTCTCAAGAAAGTCCTTGTCCTCAAGCTCACATATTGCATATTTTTGGCCGAGGTGGTGAAATCCAGCCGCACTTAGATGCAATTTTGTTTGAGAATGCAGTCTGTGTGTCTGAATTTTCACCTGAAGCTTTGTCTTGCCTTCCTTATGTTTCTTGGGAGGTTCCTCTGAAAGAATTCCAAAGTAGAATGGACCTTAGAAACTTGTGTGTTTTTACCATTGATCCTTCAACTGCCTCTGATCTGGATGATGCACTATCTATTGAGAAGTTATCTAATGGAAATTTTAGAGTAGGCATACACATTGCTGATGTATCATACTTTGTCTTACCGAACACAACCATAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTTTATATGGTACAAAGAAAGTTATCAATGTTGCCACCATCATTTTCTGAGGACATAGGATCCCTTAATCCTGGAGTGGATCGACTTGTGGTTTCCATGCTCCTGGATATAAACCTTGATGGGGATGTATTAGATCGTTGGATTGGCCGCGCTGTGATAAAGTCTTGTTGTAAGCTTTCTTATGAGCATGCACAGGACATTATTGATGGGGTTATTGATGTTGAAAGTTCAAACACAATAGAAGCTCACTATCCAAAGGTACATGGCCATTTTGAATGGCCTGATGTTATCACATCTGTGAAGAATCTATATGAAATTTCAAGAGTTTTGAAAGAAAAGAGGTTTAATAATGGGGCTTTGCGACTTGAAAGCCCCAAAGTTGTTTTCCTGTTTGATGAGGATGGAATTCCTTATGATAGTATGCTCTCAGAGCGAAAAGAATCGAATTTTCTGGTTGAAGAATTTATGCTTTTGGCTAATCGAACAGCTGCTGAAGTTATTTGTAGAGCATATCCTGATGCTGCATTGTTACGGAGACATCCTGAACCTAATTTGCGGAAGCTAAGAGAGCTTGAGGCATTTTGTAACAAACATGGTTTAGAACTTGACTCATCTTCATCTGGTCTACTCCAACAGTCTTTAGAGAAGATCAGGGAAAAGCTTAAGGGTGATCCAACACTTTGTTATATTCTTATTTCATATGCTACAAAGCCAATGCAGTTGGCACAATATTTCTGTAGTGGGGATTTAAAGGACAAACAAAGTGATTGGGGTCATTATGCTTTGGCTGTCTCTGCTTACACTCATTTTACTTCACCTCTGCGTCGGTATCCTGATATAATTGTTCATCGTATGTTACTTGCTGTCATAGAGGCTGAGGAAATATACCTGGAGCATGAAAAGACATTGCAGGTGAAGAAGGGAGATGCAGTGCGAGCAAGATATTTCACTGGTATGAACTTTGTCAAGGAAGCCGCCGAATCTGTGGAAGGGAAAAAGGCTCTATCAGCTTCTGCTTTGAAGCATGGAGTTCCCTGTACTGAATTGCTTGCAGATGTTGCTGCCTATTGCAATGCGAGAAAGTTAGCTTGTAGAAATGTCAAGGATGCTTGTGATAAACTTTACATGTGGGTTCTCCTCAAGAAGAAGGAGGTGTTATTATCAGAAGCAAGAATATTGGGATTAGGCCCGAGGTTCATGTCAATTTATGTTCAAAAACTAGCTATTGAGCGGCGCATATACTATGATGAAGTTCCGGGCTTGAATGTGGAATGGCTGGATGCGACCTCAACTTTGGTACTTAGCATGTCTACTGATAAACGTGCGTTTAGGAGAGGTAGCCTTGGTAAATGGAGGGCATTTGAAGTTGTTGTGTTGCTTTCTTGTCCATATGACCTGGAAGACGCCAAAGATGGTATTAATGAATGTGATGAAGTGAAAATGAGAGGCGGGGATCTTCGTTCCAGACCAGACAGTTCAGGGACTGAAATTGAGGCTGCAGTTTTCCCCCTTACTCTGCGTCTTCTTGCAACGGTTCCAGTAGCACTGCATGCTGTTGGTGGGGAGGATGGACCTCTTGACATTGGGGTGAGGCTGTTCATGAGCTCCTACTTGAGGTAA 3381 0.4191 MRAASESSVVERLDDGEKDKKKKRRSNRRSKQTSASSASCNSGNEAHGLVSECSGNIRTPIHADALLSDSSLRQQEIKICSPNEQGLSTATNVSFTSVPPLHFNEHQMDPPDLQTIQRNGGGVCSKPCSEPVDSSIIHTNKDLVPSGQTGVYVQRNYYSPHWSMEIVEKALEKGDVFKALFRVNAHNRLEAYCKIDGVPTDVLISGIHAQNRAVDGDIVAVKIDPLALWTKMKGSNGTGNVTAPVECSNLLTEDNEVEGNILMQVGKVDADSEFVNYCNCPAQDKEDVNHGPTTYGNNPYFEKKGLNNIYASPVSSSPLDALEPVTHDGHDAASDNLSISSYGAQGEVTNAVENMCSLVNSFPSKRPTGRVVAIVERSPRRESIIGHLNVRPAFPLRDICRKDAKKNKKMVSGCEYIHFMPTDLKFPKMMLLVRDLPDSMKKRLQSGDATLEMDLVAARIDNWSQESPCPQAHILHIFGRGGEIQPHLDAILFENAVCVSEFSPEALSCLPYVSWEVPLKEFQSRMDLRNLCVFTIDPSTASDLDDALSIEKLSNGNFRVGIHIADVSYFVLPNTTIDSEAQSRSTSVYMVQRKLSMLPPSFSEDIGSLNPGVDRLVVSMLLDINLDGDVLDRWIGRAVIKSCCKLSYEHAQDIIDGVIDVESSNTIEAHYPKVHGHFEWPDVITSVKNLYEISRVLKEKRFNNGALRLESPKVVFLFDEDGIPYDSMLSERKESNFLVEEFMLLANRTAAEVICRAYPDAALLRRHPEPNLRKLRELEAFCNKHGLELDSSSSGLLQQSLEKIREKLKGDPTLCYILISYATKPMQLAQYFCSGDLKDKQSDWGHYALAVSAYTHFTSPLRRYPDIIVHRMLLAVIEAEEIYLEHEKTLQVKKGDAVRARYFTGMNFVKEAAESVEGKKALSASALKHGVPCTELLADVAAYCNARKLACRNVKDACDKLYMWVLLKKKEVLLSEARILGLGPRFMSIYVQKLAIERRIYYDEVPGLNVEWLDATSTLVLSMSTDKRAFRRGSLGKWRAFEVVVLLSCPYDLEDAKDGINECDEVKMRGGDLRSRPDSSGTEIEAAVFPLTLRLLATVPVALHAVGGEDGPLDIGVRLFMSSYLR 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00335 1126 SUPERFAMILY Nucleic acid-binding proteins 486 969 IPR012340 -
Accr3g00335 1126 SUPERFAMILY Nucleic acid-binding proteins 156 377 IPR012340 -
Accr3g00335 1126 PANTHER RIBONUCLEASE 20 1123 - -
Accr3g00335 1126 Gene3D - 400 483 - -
Accr3g00335 1126 Gene3D - 152 245 - -
Accr3g00335 1126 FunFam DIS3-like exonuclease 2 148 249 - -
Accr3g00335 1126 ProSitePatterns Ribonuclease II family signature. 846 870 IPR022966 -
Accr3g00335 1126 SUPERFAMILY Nucleic acid-binding proteins 368 497 IPR012340 -
Accr3g00335 1126 MobiDBLite consensus disorder prediction 7 21 - -
Accr3g00335 1126 MobiDBLite consensus disorder prediction 31 45 - -
Accr3g00335 1126 MobiDBLite consensus disorder prediction 1 45 - -
Accr3g00335 1126 Hamap DIS3-like exonuclease 2 [DIS3L2]. 20 1101 IPR028591 GO:0000175|GO:0034427
Accr3g00335 1126 Pfam Dis3-like cold-shock domain 2 (CSD2) 416 495 IPR041505 -
Accr3g00335 1126 Pfam RNB domain 525 877 IPR001900 GO:0003723|GO:0004540
Accr3g00335 1126 SMART RNB_2 525 879 IPR001900 GO:0003723|GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00335 Accr-Chr3 3627558 3633441 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00335 K18758 - gmx:100817387 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00335 3 3627558 3633441 Accr3g00335 3 3627558 3633441 ECH