Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr3g00239 ATGTCACGCAGGGAGACGCTTCTAAGGGGGCTTGCAGCTGCAGGTGCAGGAGGCTCGTCGGGGGACCCCCCTGACACGGCTGAGCAGGTTTATATCTCGTCGTTGGCCCTTCTCAAAATGCTTAAACACGGGAGGGCTGGTGTTCCAATGGAAGTGATGGGCTTGATGTTGGGAGAGTTTCCGGATGCTTACACTGTCCGCGTCGTAGATGTTTTTGCGATGCCACAGAGTGGTACCGGCGTTAGTGTTGAAGCCGTGGATCATGTTTTTCAGACTACCATGCTCGACATGCTGAGACAGACTGGAAGACCAGAGATGGTTGTGGGGTGGTATCATTCCCATCCTGGAATGGGCTGTTGGCTTTCTGCAGTGGACATAAATACACAACAGAGTTTTGAGGCTTTAAGTCAACGTGCTGTGGCTGTGGTAGTAGATCCTATTCGGAGTGTTAAAGGCAAGGTGGTGATTGACGCCTTTAGGCTTATCAATCCACAAGCTATGTTGCTGGATCAGGAACCACGACAAACAACATCTAACCTTGGTCATCTTAATAAGCCATCTATAGAAGCTTTGATCCATGGCTTGAACCGACATTATTATTCCATAACAATCAATTACAGAAAAAATGAGTTTGAAGAGAAGATGTTGCTCAGCCTTCACAAGAAGAAATGGACTGATAGTTTGACACTCAGGCATTTTGATTCACATTCCAAGACTAATGAACAGACAGTCCAGGAGATGCTGAATTTAGCGGTCAGGTACAACAAGGCCGTCCAAGAGGAGGATGAGCTCCCGCCAGAAAAGCTTGCAATTGCTAAGGTGGGAAGGCAAGATGCTAAGAAGCACCTTGAAGAGCACGTTTCCAATTTGATGTCTTCTAACATTGTTCAGACTTTGGGAATGATGCTAGATTCTGTTGTATTTTAG 927 0.4671 MSRRETLLRGLAAAGAGGSSGDPPDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFPDAYTVRVVDVFAMPQSGTGVSVEAVDHVFQTTMLDMLRQTGRPEMVVGWYHSHPGMGCWLSAVDINTQQSFEALSQRAVAVVVDPIRSVKGKVVIDAFRLINPQAMLLDQEPRQTTSNLGHLNKPSIEALIHGLNRHYYSITINYRKNEFEEKMLLSLHKKKWTDSLTLRHFDSHSKTNEQTVQEMLNLAVRYNKAVQEEDELPPEKLAIAKVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDSVVF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr3g00239 308 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 24 305 - -
Accr3g00239 308 CDD MPN_RPN11_CSN5 24 285 - -
Accr3g00239 308 Gene3D Cytidine Deaminase, domain 2 18 233 - -
Accr3g00239 308 Pfam Maintenance of mitochondrial structure and function 172 295 IPR024969 -
Accr3g00239 308 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 27 137 IPR000555 GO:0005515|GO:0008233|GO:0008237
Accr3g00239 308 SUPERFAMILY JAB1/MPN domain 30 167 - -
Accr3g00239 308 FunFam 26S proteasome non-ATPase regulatory subunit 20 233 - -
Accr3g00239 308 ProSiteProfiles MPN domain profile. 30 165 IPR037518 -
Accr3g00239 308 SMART pad1_6 29 164 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr3g00239 Accr-Chr3 2567903 2570488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr3g00239 K03030 - gmx:100813116 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr3g00239 3 2567903 2570488 Accr3g00239 3 2567903 2570488 ECH