Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g03468 ATGTCTTCTTTGAGCAGAGAATTGGTGTTTCTCATTCTCCAATTTCTGGAGGAGGAGAAGTTTAAAGAGTCTGTGCACAAGCTTGAGAAGGAGTCTGGGTTTTTCTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGAGAATGGGAAGAAGTTGAGAAGTACTTATCAGGATTTACTAAAGTTGATGATAATCGATACTCCATGAAGATTTTCTTTGAAATCAGAAAACAAAAATATCTTGAAGCGCTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGAATGATTTGAAAGTATTCTCCACTTTCAATGAGGATCTATATAAAGAAATCACCCAGCTGTTAACTCTTAGTAATTTCAGGGAGAATGATCAGCTGGCCAAGTACGGTGACACTAAAACAGCTCGAAGCATTATGTTGATGGAGCTAAAAAAATTGATAGAAGCAAACCCTCTATTTCGTGATAAGCTTCTCTTCCCTACTCTTAAATCATCAAGATTGAGGACGCTAATCAATCAAAGTTTGAACTGGCAGCATCAGCTTTGCAAAAATCCAAGGCCCAACCCAGATATTAAGACTTTATTTACAGATCACACATGTTCACCTCCTAATGGTCCTTTAACGCCAACACCTGTCAATCTTCCAGTTGCTGCAGTTGCTAAGCCTGCTGTTTATACATCACTTGGTGCTCATGGTTCCTTCCCACCTGCTGCAGCTTCTGCTAATTCTATAGCTGGTTGGATGGCCAATGCTTCTGCTTCATCATCTGTCCAAGCAGCAGTTGTCACAGCATCATCCATGCCTGTTGCTCAGAATCAAGTGCCCATCTTGAAACGTCCAAGAACACCTCCAGCACCCCCTGGCTTGGTTGAGTATCAGAATTCCGATCATGAGCAGTTAATGAAAAGGCTTCGGCCTGTTCATTCTGTAGAGGAGGTTTCCTATTCTACAACTCGACAAGCTTCTTGGTCACTGGATGATCTGCCAAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTTAACAGCATGGACTTTCATCCTTCTCACCATACATTACTTCTTGTTGGTTCTACTAATGGTGAAATTGCCCTATGGGAACTTGGGTCACGGGAGAGGTTGGTTTCAAAGCCATTCAAGATATGGGATCTATCAGCATGCTCATTGCCATTTCAGGCAGCTGTTGCCAAAGATGGACCAATTTCTGTCAATCGTGTTATGTGGAGCCCAGACGGAAATTTTGTTGGTGTTGCGTTCAGCAAACATTTGGTTCACTTGTATGCCTATACTGGGTCAAATGAGCTGAGCCAACGATTGGAGATTGATGCCCATACTGGTGGCGTGAATGACTTGGCATTTGCTCATCCAAATAAACAACTATGTATTCTAACCTGTGGTGATGACAAGATGATAAAGGTGTGGGAGTTGAGTGGACGAAAACTATTCAACTTTGAGGGGCATGAAGCACCTGTCTACTCCATCTGTCCTCATCACAAAGAGAACATTCAGTTTATATTTTCAACTGCCGTTGATGGAAAAATAAAGGCATGGTTGTATGATAACATGGGTTCCAGAGTTGACTATGATGCTCCAGGTCACTGCTGTACCACAATGCTTTACAGTGCTGATGGAAGTAGATTGTTTTCTTGTGGAACAAGTAAAAATGGAGAATCTTTCCTAGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGGACTTATAATGGGTTCAGAAAGAAATCAAATGGTGTTGTGCGGTTTGACACAACCCAAAATCGCTTTTTGGCTGCAGGTGAAGACGGCCAAATAAAGTTCTGGGATATGGACAATGTTAATCTTGTAACAAGCACTGATGCAGAGGGTGGACTACAGAGCCTTCCACGTTTGAGATTTAATAAAGAAGGGAATCTTCTTGCTGTTACTACTGCGGACAATGGATTCAAGGTGCTCGCAAATGCTATTGGTCTGAGATCCTTAAGGGCAATGGAAACACCAGCATTCGAAGCATTGAGATCTCCCATAGAATCAGCTGCAAATAAGGTTTCTGGCCCCCCTGCTGTAAATGTCAGTCCTGTCAACTGTAAAGTGGAGAGAAGCTCGCCTGTCAGGCCATCTCCAATCCTTAATGGAGTTGACCCTATGGGTCTAAGTTTGGAGAAACCTAGAACCATGGAAGATGTGATAGATCGAACTAAACCATGGCAGCTATTTGAAGTCTCAGATGCCATCCAATGTCGGTTAGTTACAATGCCTGAGAGTGCAGATGCTTCCAGCAAGGTTGTTCGACTTTTATATACAAATTCTGGTGCTGGGGTTTTGGCACTTGGGTCAAATGGTATTCAGAAACTGTGGAAGTGGACTCGTAATGAACAGAATCCTACTGGGAAGGCCACTGCCAGTGTTGTTCCCCAACATTGGCAACCCAACAGTGGTCTTCTTATGACCAATGATATTTCTGGTGTCAACCTTGAAGAAGCAGTTCCTTGCATTGCACTCTCAAAGAATGACTCTTATGTTATGTCTGCCTGTGGTGGGAAGGTTTCGTTATTTAACATGATGACATTCAAGGTAATGACGACATTCATGCCACCTCCTCCTGCCTCTACTTTCCTGTCTTTCCACCCACAGGATAACAACATCATAGCCATTGGGATGGAGGATTCAACGATTCACATTTATAATGTTAGAGTGGATGAGGTCAAATCAAAATTGAAGGGTCACCAGAAGCGTATTACTGGTTTAGCCTTTTCAGCCAATCTTAACATACTGGTCTCGTCTGGCGCCGATGCCCAACTTTGCGTGTGGAGCATTGATACATGGGAGAAAAGAAAATCAATGACAATACAACTACCTGCGGGAAAGGCTCCTGTTGGTGATACCAGAGTCCAGTTCCATTCTGATCAACTCCGCTTATTGGTAGTTCATGAGACTCATTTGGCAATATATGATGCTTCCAAGATGGATCGCATTCGACAGTGGCTTCCACAAGACATTCTGCCTGCTCCCATGTCATATGCAACTTATTCAAGTAACAGTCTGTTAATATATGCTTCTTTTGTTGATGGTAACATTGGGGTCTTTGATGCTGATAGCTTGAGGCTCAGGTGTCGTATTGCTCCATCAGCATACTTATCACAGGCGGCTTTAAGTGGAAGCCAAGCTGCGTACCCTCTTGTGGTTGCAGCTCATCCACAAGAGCCTAACCAATTCGCCGTTGGATTGACCGATGGATCCGTCAAAGTAATAGAGCCCTCTGAATCAGAGGGTAAATGGGGATCTACCCCACCTGTAGATAATGGAGTGCTAAATGGTAGGCAAGGGCAATCATCTGCTTCAAATATACACACTCCTGATCAGGCACAAAGATAA 3384 0.432 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVNDLKVFSTFNEDLYKEITQLLTLSNFRENDQLAKYGDTKTARSIMLMELKKLIEANPLFRDKLLFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLTPTPVNLPVAAVAKPAVYTSLGAHGSFPPAAASANSIAGWMANASASSSVQAAVVTASSMPVAQNQVPILKRPRTPPAPPGLVEYQNSDHEQLMKRLRPVHSVEEVSYSTTRQASWSLDDLPRTVAMTLHQGSSVNSMDFHPSHHTLLLVGSTNGEIALWELGSRERLVSKPFKIWDLSACSLPFQAAVAKDGPISVNRVMWSPDGNFVGVAFSKHLVHLYAYTGSNELSQRLEIDAHTGGVNDLAFAHPNKQLCILTCGDDKMIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGHCCTTMLYSADGSRLFSCGTSKNGESFLVEWNESEGAIKRTYNGFRKKSNGVVRFDTTQNRFLAAGEDGQIKFWDMDNVNLVTSTDAEGGLQSLPRLRFNKEGNLLAVTTADNGFKVLANAIGLRSLRAMETPAFEALRSPIESAANKVSGPPAVNVSPVNCKVERSSPVRPSPILNGVDPMGLSLEKPRTMEDVIDRTKPWQLFEVSDAIQCRLVTMPESADASSKVVRLLYTNSGAGVLALGSNGIQKLWKWTRNEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLSFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSANLNILVSSGADAQLCVWSIDTWEKRKSMTIQLPAGKAPVGDTRVQFHSDQLRLLVVHETHLAIYDASKMDRIRQWLPQDILPAPMSYATYSSNSLLIYASFVDGNIGVFDADSLRLRCRIAPSAYLSQAALSGSQAAYPLVVAAHPQEPNQFAVGLTDGSVKVIEPSESEGKWGSTPPVDNGVLNGRQGQSSASNIHTPDQAQR 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g03468 1127 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Accr2g03468 1127 MobiDBLite consensus disorder prediction 1088 1127 - -
Accr2g03468 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 381 IPR001680 GO:0005515
Accr2g03468 1127 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1109 IPR027728 GO:0006355
Accr2g03468 1127 SUPERFAMILY WD40 repeat-like 328 653 IPR036322 GO:0005515
Accr2g03468 1127 Pfam WD domain, G-beta repeat 908 941 IPR001680 GO:0005515
Accr2g03468 1127 Pfam WD domain, G-beta repeat 446 479 IPR001680 GO:0005515
Accr2g03468 1127 ProSitePatterns Trp-Asp (WD) repeats signature. 467 481 IPR019775 -
Accr2g03468 1127 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 944 - -
Accr2g03468 1127 FunFam Topless-related protein 3 728 962 - -
Accr2g03468 1127 Gene3D - 762 1099 IPR015943 GO:0005515
Accr2g03468 1127 SMART ctlh 34 92 IPR006595 -
Accr2g03468 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 590 621 IPR001680 GO:0005515
Accr2g03468 1127 MobiDBLite consensus disorder prediction 1104 1127 - -
Accr2g03468 1127 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Accr2g03468 1127 SMART Lish 4 36 IPR006594 GO:0005515
Accr2g03468 1127 Gene3D - 312 384 IPR015943 GO:0005515
Accr2g03468 1127 SMART WD40_4 1047 1088 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 902 941 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 333 372 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 859 899 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 482 523 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 820 856 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 572 612 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 389 433 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 437 480 IPR001680 GO:0005515
Accr2g03468 1127 SMART WD40_4 526 569 IPR001680 GO:0005515
Accr2g03468 1127 SUPERFAMILY WD40 repeat-like 827 1089 IPR036322 GO:0005515
Accr2g03468 1127 Gene3D - 406 664 IPR015943 GO:0005515
Accr2g03468 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 950 IPR001680 GO:0005515
Accr2g03468 1127 ProSiteProfiles Trp-Asp (WD) repeats profile. 446 489 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g03468 Accr-Chr2 70239265 70249931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g03468 445 653 Miscellaneous Gene Families AT5G08390 25.822 2.19e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g03468 - - gmx:100793575 2015.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g03468 2 70239265 70249931 Accr2g03468 2 70239265 70249931 ECH