LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g02865	ATGGGCGCAAGTCGAAAGCTTCAGGGTGAGATAGATCGCGTTCTTAAGAAGGTCCAAGAAGGTGTTGAGGTCTTCGATAGTATTTGGAACAAGGTTTACGATACAGACAATGCCAACCAGAAGGAGAAATTTGAGGCAGACCTGAAGAAGGAGATTAAGAAGCTCCAGAGGTACAGAGACCAAATTAAGACTTGGATACAGTCTAGCGAGATCAAGGATAAGAAGGTTAGTGCCTCTTATGAGCAGGCTCTGGTGGATGCTCGTAAGCTCATCGAGCGTGAAATGGAAAGATTTAAGATCTGTGAAAAGGAAACTAAGACCAAAGCCTTCTCCAAAGAAGGCTTGGGCCAACAGCCTAAAACTGATCCAAGGGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAATAATGTGGTTGGAGAGTTAGAATCTCAAATTGATAGCTTTGAAGCTGAGCTTGAAGGACTTTCTGTCAAAAAGGGGAAAACCAGACCACCTAGATTGACGCATCTAGAGATGTCAATTGTCCGACACAAGGCTCATATAAAAAAATGTGAGTTGCTCCTGAGGCTGCTAGACAATGATGAATTAAGTCCTGAGCAGATTAATGATGTCAAAGATTTCTTGGATGACTATGTGGAGCGTAATCAGGAGGTCTTTGATGAATTCAGTGACGTCGATGAGTTGTACAGTTCATTACCTTTAGACAAGGTGGAGTCTCTCGAAGATCTTGTCACAATTGGTCCACCTGGTCTTGCTAAGGGTGCACTTGGTCTTAGTTTGAAGACATCTGTAGCTGCATCACCTTCACAAACATCTGAACAAGCAGATGACACTGCCTCCCAGGATAGCAATTCTGATACTGTTGTCAGAACACCGCCTTCTAAAAGTAGTGGAATCAGTTCTGCTATGTCAACACCAGCTGGGAACCATGCTACTCCTGTTTCTTTGAATGTTTCGTCTCAGAACTTGCCTGGTGCTACTGCTGCAGCATCTGTCCTCCCTGGTTCAAATTTGGTTCGGACTGCTCCGGAGAATACTGGTGCTTCTAATTCTTCATCTGTAAATCAGTCTACCTCTGTGAAAGAAGATGAGGTTAATGGCTTCCCTGGCCGGAGATCATCTCCATCACTTTCTGATGCTGCACATGCGAGAGGCATCAGTAGAAACAGCCTGCCAAATCAAGTGACATCTGGAATCCCTCTTGCTTCCAGCAACATTGTTTCCAGCAATGGGGCCCTTGGTTCAGTCCCTTCAGCCTCTGAAATAACAAAGAGAAACTTACTGGGAGCCGATGACAGGCTTGGAAGTAGTGGAATGGGGCAGCCTCTTCTATCACCCTTAAGCAATAGAATGATGTTGCCTCAGGCTGTGAAGGCTAATGATGGAACCAGTCCTGTTGACCCTAATAATGTTAATGATGCTGCAGCTGTATCTGGGAGAGTTTTTTCCCCTTCTGGTGTTCCAGGCATGCAGTGGAGACCGGGAAGTCCTTTCCAGAACCAAAATGAGACAGGGCAGCTTCGTGGAAGAACTGAAATAGCGCCTGACCAGAGAGAAAAGTTTTTGCAGAAGTTTCAGCAAGTGCAGCAACAAGGGCATAGTACCCTTCTTGGTATGCCTTCTCTTGCTGGTGGAAGTCATAAGCAGTTTTCTGCTCAGCAGCCAAATCCTCTCTTGCAGCAGGCATCAGGTCTCAGTAGCATTTCATCCACCTCATTACAGCAGCCATCCAATTCTATCCTTTCTCCATCTAGTCAACAGGCAATGATATCAAGTGTTTCTCAAGATTCTGATGGCAATTCTAAAGTTGAAGAACATCAGCAACAACAGAATACTCCTGATGATTCAGTGTCTGAATCTACTGCCAGCAATGGGCTCGGCAAGAATCTTCTAAGTGAAGAGGATTTAAAATCCACATATGCTGTAGAATCTCCTCAGGCAGGAGGGTCCGGTTCTCTTACTGAGCCTGCTCAGAGTTCCAGAGATGCTGATTTCTCTCCTGGACAACCTTTACAATCCAATCAACTTTCTGGTAACCTTGGTGTTATTGGAAGAAGAAGTGTTGCTGACTTTGGAGCCATTGGTGATAATCTTAATGGAACAAATGTCAATTCTGGCGGAGGGCGTGACCATTTATATAATATGCAGATGCTTGAGGCCGCATACTACAAACTTCCACAACCTAAAGACTCAGAACGTCCACGGACTTACACGCCTAAGCACCCAGCAATAACACCTCCAAGTTATCCTCAAGTACAGGCCCCCATTGTCAGTAATCCCGCCTTTTGGGAGAGAGTAGGTGTTGAACCATATGGCACTGACACCCTCTTTTTTGCATTTTATTATCAACAGAACACTTACCAACAATATTTGGCTGCAAAGGAACTAAAGAAGCAGTCTTGGAGATATCACAGAAAATATAACACATGGTTTCAGAGACATGAAGAGCCTAAAGTTGCTACAGATGAATTTGAGCAGGGAACATATGTATATTTCGATTTTCATATTGCAAATGACGATCTGCAACATGGGTGGTGTCAAAGAATCAAGACCGAGTTCACTTTTGAGTATAATTATCTTGAAGACGAGCTTAGTGTATAG	2604	0.4424	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDSFEAELEGLSVKKGKTRPPRLTHLEMSIVRHKAHIKKCELLLRLLDNDELSPEQINDVKDFLDDYVERNQEVFDEFSDVDELYSSLPLDKVESLEDLVTIGPPGLAKGALGLSLKTSVAASPSQTSEQADDTASQDSNSDTVVRTPPSKSSGISSAMSTPAGNHATPVSLNVSSQNLPGATAAASVLPGSNLVRTAPENTGASNSSSVNQSTSVKEDEVNGFPGRRSSPSLSDAAHARGISRNSLPNQVTSGIPLASSNIVSSNGALGSVPSASEITKRNLLGADDRLGSSGMGQPLLSPLSNRMMLPQAVKANDGTSPVDPNNVNDAAAVSGRVFSPSGVPGMQWRPGSPFQNQNETGQLRGRTEIAPDQREKFLQKFQQVQQQGHSTLLGMPSLAGGSHKQFSAQQPNPLLQQASGLSSISSTSLQQPSNSILSPSSQQAMISSVSQDSDGNSKVEEHQQQQNTPDDSVSESTASNGLGKNLLSEEDLKSTYAVESPQAGGSGSLTEPAQSSRDADFSPGQPLQSNQLSGNLGVIGRRSVADFGAIGDNLNGTNVNSGGGRDHLYNMQMLEAAYYKLPQPKDSERPRTYTPKHPAITPPSYPQVQAPIVSNPAFWERVGVEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELSV	867

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g02865	867	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	236	IPR007207	GO:0005634\|GO:0006355
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	268	320	-	-
	Accr2g02865	867	FunFam	CCR4-NOT transcription complex subunit 3 isoform X1	707	862	-	-
	Accr2g02865	867	Coils	Coil	41	61	-	-
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	339	394	-	-
	Accr2g02865	867	PANTHER	CCR4 NOT-RELATED	24	864	IPR040168	GO:0030015
	Accr2g02865	867	Pfam	NOT2 / NOT3 / NOT5 family	723	861	IPR007282	GO:0006355
	Accr2g02865	867	Gene3D	-	708	862	IPR038635	-
	Accr2g02865	867	Coils	Coil	139	159	-	-
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	339	364	-	-
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	563	629	-	-
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	644	679	-	-
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	563	679	-	-
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	487	507	-	-
	Accr2g02865	867	PIRSF	NOT_su_3_5	1	867	IPR012270	GO:0006355\|GO:0030015
	Accr2g02865	867	MobiDBLite	consensus disorder prediction	110	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr2g02865	Accr-Chr2	64514841	64523771	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g02865	K12580		-	gmx:100783415	1325.84

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr2g02865	2	64514841	64523771	Accr5g01723	5	43565940	43575284	CCT
	Accr2g02865	2	64514841	64523771	Accr2g02865	2	64514841	64523771	ECH