Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr2g02378 | ATGGCCTTGAGAAGGTTTCTGAAACCCATTGCTAAACCATCACCCTCGCCGCCGTCGCCGCCCCTTTCTCCAATTCCCAACCCTCCACTACCGGCCCCACCTGTCACTTCTCTCTCCCCACTTCCTACTCTGACTCTTTCTCCCAACTCCCACTATCATCACCTCCTCCACTTCGTTAAGACCCATCTTACTCCTCCTTTCACACCAGACAGCCTTCTCCACTTCCTCAAATCCAAGCTCCATTACCATCCTAGTTTCAGCCTCTATGACTTTCATATCTTCAATTGGGCCTCCACTATCGACTCCTATCGCCACAACCACTCTACTTTCGAATGGATGGCTCGTACTCTCGCTATTACCAACCGCCTCGTCGAACTTCGAGATCTTCTCCAATTTATGACCTCCAATCCTTGCCCCTGCTCCGACGGTATCTTCTCTTGCTCTCGAACCGAATCTATATTCCAGTTTTCGATTAACGCTTTTTGTAAAGCTCGGAAACTGGACGATGCTGCTTTCGCTTTTGAGTGTATGCGGAGATTGATTGATGGGAAACCTAATGTGGTGATTTGTAACTGCTTGATTCATGGGTTTGTAAAATGCGGTAGGCACGATAAAGCGTTGGAATTTTATGATAAAATGATAAGAGATAGAGTCAAGCCTGATGTGTTTACCTTTAATATTTTGATTAGTAGTTATTGTCGAAATTCACAATTTGGAATGGCTCTGGATTTGTTTAAGGAGATGAGGGAAAAGGGATGCAATCCCAATGTGGTTACTTTTAATACCTTGATTAAGGGGTTCTTTAGGGAGCGGAAAATTGAAGAAGGGATTGAGATAGCTTACGAGATGATTGAATTGGGGTGTCAGCTCTCAAGCGTGACTTGTGAGATTTTAGTTGATGGACTTTGTAAGGAAGGTCAGGTTTTGCGAGCTTGTGAGATATTGGCAGACTTGTCCCGCAAGAGACTTTTGCCCAATGGATATGATTATTTTGTTTTGGTGGAAGCTCTATGTGGGAAAGGTGATGTTGCTAGGGCATTGGAGCTTATTTATGAGCTATGGAACCAAGGAAATGCCCCTAGCTTGATTGCTTGCACTATATTAATTGACGGTTTAAGGAGCTTGGGGAAGACTGAAGAAGCATTTAGATTTTCAGAAAAGATGCTTAAAGAAAATATAGTGTTGGATATTGTGACTTTCAATTCTGTTCTTCAGGAGACTTGTCATATGCAAAGAACAGCAGATGCAAATAAGTTGAGATTGCTGGCTTCAAGAAAGGGTTTGAAACCAGATGGCATGACCTATAGAATTTTGGTTTCTGGGTATGCACGAGAGGGCAGTCAAAAGGAGGGAGAGAGAGTGTTAAATGAAATGTTGGATAGGGGATTTATATCTGATCTTGCTACATATAATAAATTAATGAATGGTTTCTCCAATTGA | 1440 | 0.4264 | MALRRFLKPIAKPSPSPPSPPLSPIPNPPLPAPPVTSLSPLPTLTLSPNSHYHHLLHFVKTHLTPPFTPDSLLHFLKSKLHYHPSFSLYDFHIFNWASTIDSYRHNHSTFEWMARTLAITNRLVELRDLLQFMTSNPCPCSDGIFSCSRTESIFQFSINAFCKARKLDDAAFAFECMRRLIDGKPNVVICNCLIHGFVKCGRHDKALEFYDKMIRDRVKPDVFTFNILISSYCRNSQFGMALDLFKEMREKGCNPNVVTFNTLIKGFFRERKIEEGIEIAYEMIELGCQLSSVTCEILVDGLCKEGQVLRACEILADLSRKRLLPNGYDYFVLVEALCGKGDVARALELIYELWNQGNAPSLIACTILIDGLRSLGKTEEAFRFSEKMLKENIVLDIVTFNSVLQETCHMQRTADANKLRLLASRKGLKPDGMTYRILVSGYAREGSQKEGERVLNEMLDRGFISDLATYNKLMNGFSN | 479 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr2g02378 | 479 | Gene3D | Tetratricopeptide repeat domain | 333 | 479 | IPR011990 | GO:0005515 | |
| Accr2g02378 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 361 | 395 | IPR002885 | - | |
| Accr2g02378 | 479 | SUPERFAMILY | HCP-like | 171 | 392 | - | - | |
| Accr2g02378 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 431 | 465 | IPR002885 | - | |
| Accr2g02378 | 479 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Accr2g02378 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 186 | 220 | IPR002885 | - | |
| Accr2g02378 | 479 | Pfam | PPR repeat | 426 | 458 | IPR002885 | - | |
| Accr2g02378 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 256 | 290 | IPR002885 | - | |
| Accr2g02378 | 479 | Pfam | PPR repeat family | 220 | 267 | IPR002885 | - | |
| Accr2g02378 | 479 | Pfam | PPR repeat family | 360 | 409 | IPR002885 | - | |
| Accr2g02378 | 479 | Pfam | PPR repeat | 293 | 321 | IPR002885 | - | |
| Accr2g02378 | 479 | Pfam | PPR repeat | 188 | 217 | IPR002885 | - | |
| Accr2g02378 | 479 | Pfam | PPR repeat | 158 | 179 | IPR002885 | - | |
| Accr2g02378 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | IPR002885 | - | |
| Accr2g02378 | 479 | Gene3D | Tetratricopeptide repeat domain | 71 | 249 | IPR011990 | GO:0005515 | |
| Accr2g02378 | 479 | Gene3D | Tetratricopeptide repeat domain | 250 | 323 | IPR011990 | GO:0005515 | |
| Accr2g02378 | 479 | NCBIfam | pentatricopeptide repeat | 434 | 465 | IPR002885 | - | |
| Accr2g02378 | 479 | NCBIfam | pentatricopeptide repeat | 258 | 291 | IPR002885 | - | |
| Accr2g02378 | 479 | NCBIfam | pentatricopeptide repeat | 223 | 257 | IPR002885 | - | |
| Accr2g02378 | 479 | NCBIfam | pentatricopeptide repeat | 188 | 222 | IPR002885 | - | |
| Accr2g02378 | 479 | NCBIfam | pentatricopeptide repeat | 293 | 326 | IPR002885 | - | |
| Accr2g02378 | 479 | NCBIfam | pentatricopeptide repeat | 364 | 396 | IPR002885 | - | |
| Accr2g02378 | 479 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 221 | 255 | IPR002885 | - | |
| Accr2g02378 | 479 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 66 | 372 | - | - | |
| Accr2g02378 | 479 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr2g02378 | 153 | 477 | Glycosyltransferase | AT1G05670 | 29.448 | 3.84e-45 | 166 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr2g02378 | - | - | qsa:O6P43_009569 | 667.922 |