Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g02196 ATGATCAACGCACCCAACGGCATGATATCCCCGTCTTCATCCGCTACCGCCCAATCCCCTGGTCTCAAGACTTATTTCAAGACTCCTGAAGGTCGCTACAAGCTTCAGTACGAGAAGACACATCCTTCCGCCCTCCCTCACTATGCCCTCGGCAAAACCGTCACTCAGGTAACTCTTGCACATCTCAAGGAGAAGCCAGCTCCTTCGACACCAACTGCCCCACCATCAAGTTTTAGTGCCAGCAGTGGGGTACGGTCAGCAGCTGCTAGATTGTGGGGAGGTGGCAATGGAAGCCGTGCACTTAGTTTTGTTGGAGGGAATGGTAGCAGCAAGAATATTGGGGTAAACAGTAGGATTGGTTCTCTTGGTGCCTCAAGTTCAAGTAGTTTAATGGCTAATTCAAATTTTGATGGGAAAGGAACGTACTTGATCTTCAATGTTAGTGATGCAATTTTTGTTAGTGTATTGAATTCTCAAGACAAGGATCCTATAAAGTCCATTCACTTCAGTAATTCGAATCCTGTGTGCCACGCCTTTGATGAGGAAGCGAAGGATGGACATGATTTGCTTATTGGTTTGAGTACGGGTGATGTGTACTCAGTGTCACTGAGACAGCAATTACAGGATGTCGGTAAAAAGCTTGTAGGAGCTCATCATTACAACAAGGATGGTTCTGTCAACAACAGTCGTTGTACTAGTATTGCATGGATTCCTGGAGGTGATGGTGCTTTTGTTGTTACTCATGCCGATGGGAATTTGTATGTATATGAAAAGAACAAAGATGGTGCTGGAGATTCTTCATTCCCAATTATTAAGGATCAAGCACAGTTTTCTGTTTCTCATGCACGTTACAGTAAGAGTAATCCAGTGGCTAGATGGCATATATGCCAGGGTTCAATTAACAGTATTTCTTTCTCAAATGATGGTGCATACTTAGCAACTGTTGGAAGAGATGGCTATTTGCGAGTGTTTGATTTCTCTAAGGAACAACTTATATGTGGTGGTAAAAGTTATTATGGCGCTCTGTTATGTTGTGCTTGGAGCACGGATGCAAAATATATTTTGACTGGCGGAGAAGATGATCTTGTGCAAGTTTGGAGCATGGAGGACCACAAGGTTGTGGCATGGGGTGAGGGACACAACTCATGGGTCAGCGGAGTGGCTTTCGATTCATATTGGACACCACCTAATTCAGATGATAGTACTGAAACTGTTATGTATCGGTTTGGATCTGTTGGTCAGGATACACAGTTGCTTCTGTGGGACCTGGAAATGGATGAGATTGTGGTACCGTTGCGGCGTGCACCTGGTGGATCCCCCACTTACAGTGCTGGGAGCCAGTCAGCTCACTGGGACGGTGTTGTCCCGTCGGGCTTGATATTCACCCAGGAATCTGTACTCACTGCTTGTCGGGAAGGACACATTAAAATCTGGACGAGACCTGGGATAACTGAGAGCCAACCAAGCAGCTCTGAAACCTTGCTAGCTGCCAGCTTGAGGGAGAAACCACTATTTCCAAGCAAGTTTTCGCATGATTTCTCAGAAGATGAACCAACTGGTCCTACTGTATATTGA 1575 0.4559 MINAPNGMISPSSSATAQSPGLKTYFKTPEGRYKLQYEKTHPSALPHYALGKTVTQVTLAHLKEKPAPSTPTAPPSSFSASSGVRSAAARLWGGGNGSRALSFVGGNGSSKNIGVNSRIGSLGASSSSSLMANSNFDGKGTYLIFNVSDAIFVSVLNSQDKDPIKSIHFSNSNPVCHAFDEEAKDGHDLLIGLSTGDVYSVSLRQQLQDVGKKLVGAHHYNKDGSVNNSRCTSIAWIPGGDGAFVVTHADGNLYVYEKNKDGAGDSSFPIIKDQAQFSVSHARYSKSNPVARWHICQGSINSISFSNDGAYLATVGRDGYLRVFDFSKEQLICGGKSYYGALLCCAWSTDAKYILTGGEDDLVQVWSMEDHKVVAWGEGHNSWVSGVAFDSYWTPPNSDDSTETVMYRFGSVGQDTQLLLWDLEMDEIVVPLRRAPGGSPTYSAGSQSAHWDGVVPSGLIFTQESVLTACREGHIKIWTRPGITESQPSSSETLLAASLREKPLFPSKFSHDFSEDEPTGPTVY 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g02196 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 376 IPR001680 GO:0005515
Accr2g02196 524 PANTHER WD REPEAT PROTEIN 13 452 - -
Accr2g02196 524 SUPERFAMILY WD40 repeat-like 140 479 IPR036322 GO:0005515
Accr2g02196 524 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 334 IPR001680 GO:0005515
Accr2g02196 524 Gene3D - 12 486 IPR015943 GO:0005515
Accr2g02196 524 SMART WD40_4 328 367 IPR001680 GO:0005515
Accr2g02196 524 SMART WD40_4 286 325 IPR001680 GO:0005515
Accr2g02196 524 SMART WD40_4 211 257 IPR001680 GO:0005515
Accr2g02196 524 SMART WD40_4 370 422 IPR001680 GO:0005515
Accr2g02196 524 MobiDBLite consensus disorder prediction 1 23 - -
Accr2g02196 524 Pfam WD domain, G-beta repeat 297 325 IPR001680 GO:0005515
Accr2g02196 524 Pfam WD domain, G-beta repeat 342 367 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g02196 Accr-Chr2 56858459 56863316 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr2g02196 302 466 Miscellaneous Gene Families AT5G08390 23.030 1.97e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g02196 K24741 - gmx:100782580 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr2g02196 2 56858459 56863316 Accr2g02196 2 56858459 56863316 ECH