Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr2g01964 ATGTCTGGGGAAGGCTTTGATGGACAGGATGCGGGCTATGTACCTGAGGACCCCAATTTTCCACAAAATCATTCTGATGAACATGATGCAGGAGTGATTGATAATACCGGATTTCCCGAACAAGAGTCTGTAGAACATGATGCGGGCAATGTAGTTGAGGAATACAATCCTCCAGACAATCATTTGGATGGAGTTGATGCTGGAGATTTGCCAAAAAATTCTGAATCTCCACAAAAGCATATCGATGAACATCATGATGTTGGAGATATACCTGAGGGTTTTGATTCTCAGAAGCATGAACATGACTTAGATTTAAAAGGAACTGAAATAAAACGGTGGCCTGGTTGGCCTGGAGAGAATGTATTCAGAATGTTGGTTCCTGTTCAGAAGGTTGGCAGTATTATTGGCCGCAAGGGGGAATTTATTAAGAAAATTACCGAGGAGACAAAAGCTCGTATTAAAATACTTGATGGTCCCCCTGGAACCTCAGAAAGAGCTGTAATGGTATCTGCAAAAGAGGAGCCAGATCGCACCATACCGCCTGCAGTTGATGGTTTGTTAAGGGTTCATAAACAAATTGTCAATGTTGACCGTGATCCTGCTGATAGCACATCTGTTGCTGGACGCTCAATTGTTACAAGACTTCTTGTTGCTGATACTCAAGCGGGAAGCTTGATTGGGAAGCAAGGGTCTACTATAAAATCCATTCAAGATACATCTGGTTGTACCATACGAGTCCTTGGATCAGAGCACCTGCCAGTTTTTGCCCTGCGGGATGATAGTGTTGTTGAAATACAAGGCGAATCTTCTGGAGTTCACAAAGCAGTTGAACTAATTGCAACTCATCTAAGAAAATTCTTGGTAGACCGAAGCATAGTTGGAGTATTTGAAACACAGATGCAATCGCCAGATGTTCGACCCAACCAGAATGCACCACCTCACCAGCCATGGGGTCCTCCTCCTCAAGGATTTCCAGCTCCTGCAGCTGGTGGACCTCCATTTGCTCCTAACCCGCAATATATGCCACCTTCGCATCACTACGATAACTATTACCCACCTGCTGATCTGCCTCCTATTGACAAGCACCTTCATCAGGGACCACCGGCCTATGGAAGGGATGCTTCTATGGTGCCCGGTGCGCAACCACAACAATCCGTTGTGACCAAGGTTACACAGCATATGCAAATTCCTCTGTCCTATGCAGATGCAGTTATTGGAACATCAGGTGCAAACATCAGTTACATTCGGCGTGCTAGTGGAGCAAGTATTACAATTCAGGAGACAAGGGGTGTGCCAGGGGAAATGACTGTTGAAATAAGTGGGACTGCTTCACAAATACAAACTGCTCAGCAGCTGGTTCAGAATTTCATGGCTGAAGCTGCAAGCGCGGCTCAGGATCAGATGGGGGGATCGGCAGTTGGGCAAGGCTACAATTCGTATCCTGCAAATGCTCCTGTGTATGCATCTCCACCCTCAAGCGCTGGTGGCCATACAGGCCACGCCCCTGCTGCTGATTATGGTCCTGTATACGGCACCAATTATGGCTATTGA 1551 0.4629 MSGEGFDGQDAGYVPEDPNFPQNHSDEHDAGVIDNTGFPEQESVEHDAGNVVEEYNPPDNHLDGVDAGDLPKNSESPQKHIDEHHDVGDIPEGFDSQKHEHDLDLKGTEIKRWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTSERAVMVSAKEEPDRTIPPAVDGLLRVHKQIVNVDRDPADSTSVAGRSIVTRLLVADTQAGSLIGKQGSTIKSIQDTSGCTIRVLGSEHLPVFALRDDSVVEIQGESSGVHKAVELIATHLRKFLVDRSIVGVFETQMQSPDVRPNQNAPPHQPWGPPPQGFPAPAAGGPPFAPNPQYMPPSHHYDNYYPPADLPPIDKHLHQGPPAYGRDASMVPGAQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQTAQQLVQNFMAEAASAAQDQMGGSAVGQGYNSYPANAPVYASPPSSAGGHTGHAPAADYGPVYGTNYGY 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr2g01964 516 CDD KH-I_PEPPER_like_rpt3 389 457 - -
Accr2g01964 516 SMART kh_6 388 458 IPR004087 GO:0003676
Accr2g01964 516 SMART kh_6 118 198 IPR004087 GO:0003676
Accr2g01964 516 SMART kh_6 209 284 IPR004087 GO:0003676
Accr2g01964 516 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 173 IPR036612 GO:0003723
Accr2g01964 516 Pfam KH domain 391 454 IPR004088 GO:0003723
Accr2g01964 516 Pfam KH domain 213 280 IPR004088 GO:0003723
Accr2g01964 516 Pfam KH domain 122 174 IPR004088 GO:0003723
Accr2g01964 516 ProSiteProfiles Type-1 KH domain profile. 389 453 - -
Accr2g01964 516 ProSiteProfiles Type-1 KH domain profile. 210 279 - -
Accr2g01964 516 Gene3D - 119 289 - -
Accr2g01964 516 MobiDBLite consensus disorder prediction 1 85 - -
Accr2g01964 516 ProSiteProfiles Type-1 KH domain profile. 119 186 - -
Accr2g01964 516 MobiDBLite consensus disorder prediction 301 347 - -
Accr2g01964 516 CDD KH-I_PEPPER_rpt1_like 119 187 - -
Accr2g01964 516 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 112 478 - -
Accr2g01964 516 Gene3D K Homology domain, type 1 378 465 IPR036612 GO:0003723
Accr2g01964 516 MobiDBLite consensus disorder prediction 309 340 - -
Accr2g01964 516 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 209 293 IPR036612 GO:0003723
Accr2g01964 516 MobiDBLite consensus disorder prediction 65 85 - -
Accr2g01964 516 CDD KH-I_PEPPER_rpt2_like 212 284 - -
Accr2g01964 516 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 379 460 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr2g01964 Accr-Chr2 54075632 54080470 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr2g01964 K21444 - gmx:100799901 778.859