LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr2g01906	ATGGAAGAAGGGGAAGCCAACAAAGAAAGCGAAGTTGCTCCAGCACTGATTGCAGTTCACCCATCCCAGAAATCTGTTGCCGTTGCCGTTGGACCAACCTTACGTGTATTCGACCTTCATGCTGGTTCCGCGGCTTCATTAATTGATGACTCCAGCGTCCCTTTTCATAGAGATTCTATTAGAGCTATTCGATTTGGTTCAAAAGGGAGGCTCTTGGTATCCGCAGGCGATGACAAAACTGTCAGGATATGGTCAACTGAAAATTGGCGCTGCATTTGTACTGTGTCCTCAGAAAAGAGAGTTAGTGCAGTCGCTATAAGCAATGATGGTTCTTATGTGTGTTTCGCTGACAAATTCGGTGTTGTCTGGGTTGTGGATCTGGCTGGATGTGATGGCGATCAACCATTAGTTGATAAGAAAGCAACCCCGCTTCTTTCTCATTATTGTAGTATCATCACTAATTTGGAATTTTCACCTGATGGTCGATTCATTATTAGTGCTGATCGGGATTTCAAAATCCGGGTTACTATTTTTCCCAACAAGCCTCTAAGTGGAGCTCATGAGATACAGAGCTTCTGTCTTGGTCATACAGAGTTTGTTTCCTGCATTGCCTTTATTCATGATCAGGATTGCCCTCAAGGCCTTCTCATATCTGGTGGTGGTGATTCAACAGTCCGTTTGTGGGACCCTTCATCTGGAGAACTCCTAGATACCTGTGAGGTTGCAGTTAAGGCAGGAGTTGCAGAGTCTAACGATGATGCGAAGGAGCATGCCTATGCTGTGACTGACTTATGCAGTATCATGGATGGATCGCTTGTTGCAGTGGCCCTTCAGAGCTTGCATGGAATAATATTGCTGAAGTGCAACCTTTCTGCTCGAACACTTTTGGTTGCCAAGGTTATCTCTATTGCAGGAGAGGCCTTTGTCCCTACTTGCTTGGGAACCAGCTCCTGTACTGGGATATTGTGGATGGTAACAGGTGTGTCTAGTCTACCGGGTTCTGTGGCACGTGTTCGAGCAATTTCTGGTTTCGATGTTGAGCAAGACCCAGCAGTTGTTGAAGATGACAAGATCCCTGGGGGAGAGAAGTTGCTGGAAACTTTACAGGGGAGCACATCTGTTGATGAGAACGCTTTCATGGCTGCTGCTGAAGCCGTCAAGACAGCAATGTGCAATCTATTGATTAAAAAGCAATACTCTACAGAGAATAGAGAAACTAGGAAGAGGACCAGAAATGATAGAAAATTGAAAACGCAACAGAGTTAG	1266	0.4534	MEEGEANKESEVAPALIAVHPSQKSVAVAVGPTLRVFDLHAGSAASLIDDSSVPFHRDSIRAIRFGSKGRLLVSAGDDKTVRIWSTENWRCICTVSSEKRVSAVAISNDGSYVCFADKFGVVWVVDLAGCDGDQPLVDKKATPLLSHYCSIITNLEFSPDGRFIISADRDFKIRVTIFPNKPLSGAHEIQSFCLGHTEFVSCIAFIHDQDCPQGLLISGGGDSTVRLWDPSSGELLDTCEVAVKAGVAESNDDAKEHAYAVTDLCSIMDGSLVAVALQSLHGIILLKCNLSARTLLVAKVISIAGEAFVPTCLGTSSCTGILWMVTGVSSLPGSVARVRAISGFDVEQDPAVVEDDKIPGGEKLLETLQGSTSVDENAFMAAAEAVKTAMCNLLIKKQYSTENRETRKRTRNDRKLKTQQS	421

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr2g01906	421	ProSiteProfiles	Trp-Asp (WD) repeats profile.	53	94	IPR001680	GO:0005515
	Accr2g01906	421	Gene3D	-	15	97	IPR015943	GO:0005515
	Accr2g01906	421	PANTHER	WD40 REPEAT PROTEIN 4	13	412	IPR028884	GO:0036265
	Accr2g01906	421	Pfam	WD domain, G-beta repeat	146	175	IPR001680	GO:0005515
	Accr2g01906	421	Pfam	WD domain, G-beta repeat	55	85	IPR001680	GO:0005515
	Accr2g01906	421	Pfam	WD domain, G-beta repeat	193	229	IPR001680	GO:0005515
	Accr2g01906	421	SMART	WD40_4	138	177	IPR001680	GO:0005515
	Accr2g01906	421	SMART	WD40_4	88	126	IPR001680	GO:0005515
	Accr2g01906	421	SMART	WD40_4	185	229	IPR001680	GO:0005515
	Accr2g01906	421	SMART	WD40_4	46	85	IPR001680	GO:0005515
	Accr2g01906	421	Hamap	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4].	23	410	IPR028884	GO:0036265
	Accr2g01906	421	SUPERFAMILY	WD40 repeat-like	16	278	IPR036322	GO:0005515
	Accr2g01906	421	FunFam	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit	13	98	-	-
	Accr2g01906	421	Gene3D	-	98	326	IPR015943	GO:0005515
	Accr2g01906	421	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	53	88	-	-
	Accr2g01906	421	FunFam	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit	99	352	-	-
	Accr2g01906	421	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	193	234	-	-
	Accr2g01906	421	MobiDBLite	consensus disorder prediction	402	421	-	-
	Accr2g01906	421	ProSiteProfiles	Trp-Asp (WD) repeats profile.	193	238	IPR001680	GO:0005515

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr2g01906	56	236	Miscellaneous Gene Families	AT5G08390	25.683	4.39e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr2g01906	K15443		-	qsa:O6P43_007011	619.002

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr2g01906	2	53262279	53265280	Accr2g01906	2	53262279	53265280	ECH