Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02901 ATGAATCTTCATACCCTTTTTATCCTCTTCCTTGTAATCTTACTCATCTGCGGTCACGTTCATGGCCGCCGCGTCACCCACCCTCCATCATCGTCTTCTTCCTCTGATCCGATCTCAGACGGAGTCTCTGATTATTCGCTGCAGAGCAAGCACATACTGCTACCCCGGGGGTTTCAGTTTCTGACGGAATCCACCTGTGAGCAGACTTATGGATTCTTACCCTGTACCACAACTGTGCTTGGAAACCTGTTCCTCATCATCGTCTACGGCTTTCTCATGTACAAGGCAGCTACTTTCTTGTCCGGTGGGAGTGAGCTCTTGCTCGAGATCTTAGGCCCTGGTATAGTGGGTGGCTTGTTCCTCCCCATACTCGGTGCTCTTCCAGATGCCATGCTTATACTCGTTTCCGGGCTTTCTGGTAGTAAAGAAACTGCTCAAAGTCAGGTCTATGTTGGAATGGGCTTGCTAGCTGGGTCGACAGTTCTGCTTCTGACTATTATATGGGGAACCTGCGTAATTGTTGGGAAGTGCGACCTTGTGGACTCAAAAGCAATAGATTCACGAGACACGAGGGGATTTAGCTTAACCGGTTCTGGTGTTAGTACAGATATTTGGACAAGTTATGCAGCAATGATTATGGCCATATCCGTCCTTCCATTTTTGATTGTTCAGTTACCACAAATTCTCAATTCAACTTCAGCAAGGCACCTGGCTGTTTTGATTGCACTCGTTGTCTCTGTGTCTTTGTTGATTGCTTATTGCCTTTACCAGATCTTCCAGCCTTGGATACAGAAGAGAAAACTTAATTATGTGAAACACAAGCACGTTATTTTAGGTCTTTTGAAACACTTGAAGCAGCATTCATTGGGAAGGTTACTGAGAGATGACGGTGAACCTGATCAACATATGATAGAAAAATTATTTGATAGCATTGATGAGAATAATGATCAGTACCTTTCTTACCGTGAACTAAGAGCACTAATTATTGGAATTGAATTTGAGGAGATTGACCTGGATCATGATGATGCTGTACAGAGAATAATGGAAGAGTTTGATACTTCTCGGGATTCACATATTGATGTCGGTGAATTTGTAAAAGGTATAACTAAATGGCTTCGAAAGGTTATGCGTTCTCGGGCTGCCACTGGGGATGCTGGTCCACGGACAATGAAGTTCTTAAGCGATTTTCGCCAAGAAACAGAAAGGGAACGTGATCTATTGCACGTGGGAAATCATAGCGAAACAGTTGAAGAGGGTGTAGCTGATACTAAATTGAATGTTATCAAAGCAGTGCTGCTGCTTCTTCTTGGGACTATCATAGCAGCTGTATTTGCTGATCCTTTGGTGGATGCAGTTGATAACTTTTCTGATGCCACAAACATTCCTGCTTTCTTCATCTCCTTCATTGCGCTGCCTTTGGCTACTAATTCCAGTGAAGCAGTGTCAGCAATCATTTTTGCTAGTCGTGATAAGAGGGAAACAGCCTCATTAACCTTTTCTGAGCTATATGGGGCAGTGACAATGAACAATGTGCTGTGCCTTTCGGTGTTCTTGGCCCTTGTTTATGCAAGGGGATTGACATGGGACTTCTCTTCTGAAGTGCTGGTTATTGTCATAGTTTGCCTTGTAATGGGTCTCTTTGCCAGCTTCCGCACTAGCTTCCCTCTCTGGACAGCTATAATGGCTATCCTACTGTACCCCTTTTCCCTGGCTTTGGTGTATGTTCTTGATTCTGTGTTTGGCTGGTCTTAG 1752 0.4424 MNLHTLFILFLVILLICGHVHGRRVTHPPSSSSSSDPISDGVSDYSLQSKHILLPRGFQFLTESTCEQTYGFLPCTTTVLGNLFLIIVYGFLMYKAATFLSGGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVYVGMGLLAGSTVLLLTIIWGTCVIVGKCDLVDSKAIDSRDTRGFSLTGSGVSTDIWTSYAAMIMAISVLPFLIVQLPQILNSTSARHLAVLIALVVSVSLLIAYCLYQIFQPWIQKRKLNYVKHKHVILGLLKHLKQHSLGRLLRDDGEPDQHMIEKLFDSIDENNDQYLSYRELRALIIGIEFEEIDLDHDDAVQRIMEEFDTSRDSHIDVGEFVKGITKWLRKVMRSRAATGDAGPRTMKFLSDFRQETERERDLLHVGNHSETVEEGVADTKLNVIKAVLLLLLGTIIAAVFADPLVDAVDNFSDATNIPAFFISFIALPLATNSSEAVSAIIFASRDKRETASLTFSELYGAVTMNNVLCLSVFLALVYARGLTWDFSSEVLVIVIVCLVMGLFASFRTSFPLWTAIMAILLYPFSLALVYVLDSVFGWS 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02901 583 ProSiteProfiles EF-hand calcium-binding domain profile. 339 374 IPR002048 GO:0005509
Accr1g02901 583 ProSitePatterns EF-hand calcium-binding domain. 312 324 IPR018247 -
Accr1g02901 583 ProSiteProfiles EF-hand calcium-binding domain profile. 299 334 IPR002048 GO:0005509
Accr1g02901 583 Pfam EF-hand domain pair 304 367 IPR002048 GO:0005509
Accr1g02901 583 SMART efh_1 303 331 IPR002048 GO:0005509
Accr1g02901 583 SMART efh_1 343 371 IPR002048 GO:0005509
Accr1g02901 583 SUPERFAMILY EF-hand 300 507 IPR011992 -
Accr1g02901 583 Gene3D - 242 381 - -
Accr1g02901 583 CDD EFh 303 369 IPR002048 GO:0005509
Accr1g02901 583 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 53 575 IPR004713 GO:0006812|GO:0008324|GO:0016020
Accr1g02901 583 Pfam Sodium/calcium exchanger protein 84 260 IPR004837 GO:0016020|GO:0055085
Accr1g02901 583 Pfam Sodium/calcium exchanger protein 430 574 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02901 Accr-Chr1 65966056 65969753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02901 63 583 EF-hand Containing Proteins AT1G53210 70.363 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02901 - - gmx:100809896 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g02901 1 65966056 65969753 Accr1g02901 1 65966056 65969753 ECH