Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02888 ATGTCGCATTCTGAGAAGCACGATTCCGAGCTAGGGTTAGATGCTCTCCGCAAACGATTTAGCGAATCCGTGTGCTGCGAGGCGAACAAGCCGGATTTTCGCGAGCTCGATCTTGGGTCGCCGGTTTCGCCATTGCACACACGTCAGAGTGGACCTGCTGCGAGTGGACTCACCACTACTACCAGCAGCAGTTCCAGTTCATCTGGATCGGTTTCTGGGCGCCATGGGCGCAACCCGGTCTCGAAAAGATCCGATTCTGGTGCGAACAACCACTCCGGTGAGCTTTCAGGTTCCAGCGAGAGCAGTCCTACTGCCGCCGAGAGCCTTCGATCTGGGGGGAATGCCAGGAACTTCAAACCGGGTTACGCAAGATCCGATGCCGGAACCACACCACCTCTAATCTATTCGGGTCAAAGCTCTTCCGTCATATCACCGGCGTTGAATGTTCTTCCTACAGGCAATATCTGTCCGTCTGGCAGGATTGTGAAGACGGGCATGGCGTCTAATCGGACAACCAGGACGGACGTTTTGGGCTCCGGTACGGCCAATTATGGCCACGGAAGCATAATGCGGGGCGGTGGAACATCCAAACATACTGCCGGAGAGGCGGCAAGTGCGGCGAATGCAAGGGCAACCAGTGGTGGCGGGTTTAAAGGACCGTTCAAGAAATCGGCGGCAGGTTTGGATCCAGAAGAGGTAAAGAGAGCGGCGAACGAGCAGTATAAGAGGGGTAACTTTACGGAGGCATTGAGTCTTTACGATCTGGCAATTGAAGTGTCCCCAGGTAATGTCGCCTACCGGAGCAACCGTGCGGCTGCATTGACGGGATTGGGGCGGTTGACTGAGGCGGTGAGGGAATGCGAGGAGGCTGTGAGATTGGATTCTAGTTATGGAAGGGCGCACCAGCGTCTCGCCTCTCTTTTTCTCCGGTTAGGACAAGTTGACAATGCGAGGAAGCACCTATTCGGTCATGGGCTGCAGCCGGATCCTTCTGAGTTGCAAAAGCTACAATCGTTGGAGAAGCATATCAACAAATGTACTGATTTTAGAAGGATAGGTGATTGGAAAAGTACCCTCAGGGAAGTTGATGCTGCCTTTGCTGCTGGAGCAGACTCTTCTCCTCAGCTCTTTATGTGTAGAGCGGAAGCCCTTTTAAAGCTCCACCAAATTGATGATGCCCAATCGATTATGTCAGCTATTCCAAAAACAGAATCACATTCTAAATCCTCATCTCAGGCAAGGTTTTTTGGGATGCTTTCTGAAGCTTATTCTTTCGTTGTTAGAGCTCAGATTGAGATGGCCTTGGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTGGCCTTATTGATCCCCGAAACATTGAAGTTGCTGTTTTGCTCAGTAATGTAAGGATGGTGGCCAGAGCTCGAGCTCGTGGAAATGATCTTTTTAAATCTGAAAGGTTCACTGAGGCTTCCTCTGCATATGAGGAAGGTTTAAGGCTGGACCCTTCAAATGCCGTTCTCCATTGCAATAGAGCTGCTTGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGACTGCAATCAAGCTTTACACATCCAACCAAATTACACAAAGGCCCTTCTTCGAAGGGCTGCCTCAAATAGCAAGCTGGAGAGGTGGGAAGAAGCAGTCAAAGATTATGAAATCTTACGACGAGAACTTCCAGATGACAATGAAGTTGCTGAAGCGTATTTCCATGTGTACGTTGCATTAAAGAAATCTCGTGGGGAAGAAGTTCATAATTTGAAATTTGGTGGTGAAGTGGAAGGAGTATCCGGTCTTGAGCACTTTAGAGCTGCAATTTCTTTGCCAGGTGTATCTGTTGTCCATTTTGAAATTGAATCTGACTCACAATGCAAACAATTATCACCATTTGTGAATACACTGTGCAGTCGATATCCTTCTGTTAACTTCCTCAAGGTGGATATTAAAAAAAGCCCAGCAATTGCAGCCGCTGAGAATGTTAGGTTGGTACCAACTTTCAAGATCTACAAAAATGGCAGCCGTGTGAAGGAAATTGTTTGCCCCAGCCGTGATATGTTGGAACACTCTGTGAGGCATTACAGCACTTAG 2109 0.4879 MSHSEKHDSELGLDALRKRFSESVCCEANKPDFRELDLGSPVSPLHTRQSGPAASGLTTTTSSSSSSSGSVSGRHGRNPVSKRSDSGANNHSGELSGSSESSPTAAESLRSGGNARNFKPGYARSDAGTTPPLIYSGQSSSVISPALNVLPTGNICPSGRIVKTGMASNRTTRTDVLGSGTANYGHGSIMRGGGTSKHTAGEAASAANARATSGGGFKGPFKKSAAGLDPEEVKRAANEQYKRGNFTEALSLYDLAIEVSPGNVAYRSNRAAALTGLGRLTEAVRECEEAVRLDSSYGRAHQRLASLFLRLGQVDNARKHLFGHGLQPDPSELQKLQSLEKHINKCTDFRRIGDWKSTLREVDAAFAAGADSSPQLFMCRAEALLKLHQIDDAQSIMSAIPKTESHSKSSSQARFFGMLSEAYSFVVRAQIEMALGRFENAVTAAEKAGLIDPRNIEVAVLLSNVRMVARARARGNDLFKSERFTEASSAYEEGLRLDPSNAVLHCNRAACWFKLGQWERSIEDCNQALHIQPNYTKALLRRAASNSKLERWEEAVKDYEILRRELPDDNEVAEAYFHVYVALKKSRGEEVHNLKFGGEVEGVSGLEHFRAAISLPGVSVVHFEIESDSQCKQLSPFVNTLCSRYPSVNFLKVDIKKSPAIAAAENVRLVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYST 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02888 702 ProSiteProfiles TPR repeat profile. 230 263 IPR019734 GO:0005515
Accr1g02888 702 Pfam Tetratricopeptide repeat 236 295 - -
Accr1g02888 702 ProSiteProfiles TPR repeat profile. 468 501 IPR019734 GO:0005515
Accr1g02888 702 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 19 699 IPR044534 -
Accr1g02888 702 SUPERFAMILY TPR-like 230 458 IPR011990 GO:0005515
Accr1g02888 702 SMART tpr_5 502 535 IPR019734 GO:0005515
Accr1g02888 702 SMART tpr_5 264 297 IPR019734 GO:0005515
Accr1g02888 702 SMART tpr_5 536 569 IPR019734 GO:0005515
Accr1g02888 702 SMART tpr_5 468 501 IPR019734 GO:0005515
Accr1g02888 702 SMART tpr_5 230 263 IPR019734 GO:0005515
Accr1g02888 702 SMART tpr_5 422 455 IPR019734 GO:0005515
Accr1g02888 702 Gene3D Tetratricopeptide repeat domain 229 588 IPR011990 GO:0005515
Accr1g02888 702 Gene3D Glutaredoxin 596 701 - -
Accr1g02888 702 CDD TRX_family 607 694 - -
Accr1g02888 702 FunFam TPR repeat-containing thioredoxin TTL4 594 701 - -
Accr1g02888 702 MobiDBLite consensus disorder prediction 43 111 - -
Accr1g02888 702 SUPERFAMILY TPR-like 472 585 IPR011990 GO:0005515
Accr1g02888 702 SUPERFAMILY Thioredoxin-like 605 688 IPR036249 -
Accr1g02888 702 Pfam Thioredoxin 609 693 IPR013766 -
Accr1g02888 702 Pfam Tetratricopeptide repeat 502 535 IPR001440 GO:0005515
Accr1g02888 702 MobiDBLite consensus disorder prediction 31 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02888 Accr-Chr1 65849295 65852426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02888 244 566 Glycosyltransferase AT3G04240 22.324 2.21e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02888 - - pcin:129314822 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g02888 1 65849295 65852426 Accr1g02888 1 65849295 65852426 CCT
Accr1g02888 1 65849295 65852426 Accr1g03096 1 67885823 67888894 CCT
Accr1g02888 1 65849295 65852426 Accr1g02888 1 65849295 65852426 ECH