LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr1g02448	ATGGATGGGTATGAAGCAACGAGAATAGTGTTCTCGAGGATCCAGAACTTGGACCCTGAGAATGCTTCAAAAATCATGGGTCTTCTTCTGATTCAGGACCATGGCGAGAAAGAGATGATTCGTTTAGCGTTTGGGCCTGAAGCTCTGGTTCACTCTGTGGTAGTCAAAGCTCGAAACGACTTGGGATTACTTCCCTCGAACTCTCCGTCGTCGACGCCTTCAACTCCGTCTTCACCATCTCCGTTTCTTTCAACTTCTTCGAACCCAGTACCTATTTCCAGACAAAATTCTGCTTCTTCTAAGCTCCTGAACTGCACTAGTGAACTTCAGTGCCCTACTGATTTGATTTCTCCCTCTTCTTCCTCTTTACCCTTCTATGGAAACGGAGGATCCGACCCGATTGACGAGTTTCAGCTCCAAGACCAACTTTCTTTCCTCAATGATGGGTCTTCTCCGACGCTGGGACCCAAAGGCTCGGATTTGTTTTTCCCTCCTCAGTCAGATTTGTCTTCTAGTCCCACCGGCGCTGCCTTGGGCGCCGGCGGAGGTGGCTTTGGCTGGGGAGGAGGGGCGGCAGTGGCGGCGGCGCACCACCGCCGGAGCTGCTCGGTGAACGATGCGTGTTTGGCGTCAGAGGAATTGAATTCAGGGTTGGGGTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTACTGCAAGAATGGCAACACTTGCAGGTTTCTTCATGGTGGTCTTGGAGATGGTGATGGAGCTTCATCAATGGTGGTGGGGTCTCCGAGCAAGATGGAGATGGTGGAGCAGTGCCATGAGCTTCTCAGATCTAAGAGTGTTCAGCAACAGAGATTGGCTGCTGCTTCTCAGCTCATGGCTTCTTCTTTCCCTTATTCTCCAAAGTGTATGACTCTTCTGCTTCAACAGCAGCAAAATGATAGCCAAAGAGCTGCTGCTGCACTCATGATGAACGAGGATTTGCACAAATTTGGTCGATCGAGGCTAGAGAGAAGTGAGTTTTCTCTGAATGGTGGTCCTGGAATGGTGAACCCAGCTTCAAGGCAGATTTACTTGACCTTCCCTGCAGATAGTACTTTCAGAGAGGAAGATGTTTCCAATTACTTCAGCATTTATGGGCCAGTTCAAGACGTGAGGATTCCATACCAGCAGAAGCGTATGTTTGGGTTTGTGACCTTTGTTTATCCAGAGACAGTGAAGCTCATTCTGTCCAAAGGAAACCCTCATTTTGTTTGTGATGCTCGAGTTCTCGTTAAGCCTTATAAGGAAAAAGGCAAAGTTCCAGACAAGTACAGGAAGCAGCAGCAGCAGCAGTTGGACAGGGGAGATTTCTCACCATGTGGTACTCCTACTGGACTTGATGCTAGAGACCCATTTGATCTTGGTGGGAGAATGTACTATAGTACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAGGCTGATTTGCAGCAAGCTCTTGAGCTACAAAGCAGGAGGTTGATGGGTCTGCAACTTCTTGACATCAAGAAGCAGCACCACCGTGCACTTTCCACCGGAAGTCCTATACCTTCCCCCACCACTCATTCGCCGACTATGTTCTCTCAGAATCTTGTTCTTCCTCCATTTCATAGTAGCACTGAGGCTCCAGAAGAGAATGTTACTAGCTCAGCTCCTCCTGCTAGCAGCACTGCATCAATTCCTGTTGATCAGCAGCCATTGCAGCAAGCAATGAACGTATCTGTGGGCAAACAAGTGACAGTGAATGGAGATAATGGAAATACTGAAAGTAATGGCAAGCAGAGTTCTTCTTCTAGCAATGAAGACCGTGAATTGCAAGAATGTTTGGACCATAATCTCCCTGATAGCCCTTTTGCTTCTCCCACAAAAGCTGCTGGAGACTACATGGCTGCCTTCTCCTGTGGACCTAATGAGGCCATTGGTTCAGATGCTTCAGTTTCTTCTGCTAACTCTAAATTTGGAAATAGTTCATTGCTTCCAGCGGCAGCATCTGCTCTGGATATGGGATCTTTCAAATCTTTCAATTGCCAATTGCCCAGGTTCTCTTCCGGCCATGGAACCATAGGAATGTTTGCTGCCGGCACTGGCGGTGGCATTTAG	2109	0.4846	MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVVVKARNDLGLLPSNSPSSTPSTPSSPSPFLSTSSNPVPISRQNSASSKLLNCTSELQCPTDLISPSSSSLPFYGNGGSDPIDEFQLQDQLSFLNDGSSPTLGPKGSDLFFPPQSDLSSSPTGAALGAGGGGFGWGGGAAVAAAHHRRSCSVNDACLASEELNSGLGWKPCLYFARGYCKNGNTCRFLHGGLGDGDGASSMVVGSPSKMEMVEQCHELLRSKSVQQQRLAAASQLMASSFPYSPKCMTLLLQQQQNDSQRAAAALMMNEDLHKFGRSRLERSEFSLNGGPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQQLDRGDFSPCGTPTGLDARDPFDLGGRMYYSTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKQHHRALSTGSPIPSPTTHSPTMFSQNLVLPPFHSSTEAPEENVTSSAPPASSTASIPVDQQPLQQAMNVSVGKQVTVNGDNGNTESNGKQSSSSSNEDRELQECLDHNLPDSPFASPTKAAGDYMAAFSCGPNEAIGSDASVSSANSKFGNSSLLPAAASALDMGSFKSFNCQLPRFSSGHGTIGMFAAGTGGGI	702

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr1g02448	702	ProSiteProfiles	Zinc finger C3H1-type profile.	217	244	IPR000571	GO:0046872
	Accr1g02448	702	MobiDBLite	consensus disorder prediction	582	605	-	-
	Accr1g02448	702	MobiDBLite	consensus disorder prediction	429	458	-	-
	Accr1g02448	702	SMART	rrm1_1	351	421	IPR000504	GO:0003723
	Accr1g02448	702	SUPERFAMILY	RNA-binding domain, RBD	362	441	IPR035979	GO:0003676
	Accr1g02448	702	CDD	RRM_AtC3H46_like	352	421	IPR034365	-
	Accr1g02448	702	PANTHER	RNA-BINDING (RRM/RBD/RNP MOTIFS)	1	627	-	-
	Accr1g02448	702	MobiDBLite	consensus disorder prediction	582	608	-	-
	Accr1g02448	702	SMART	c3hfinal6	219	243	IPR000571	GO:0046872
	Accr1g02448	702	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	362	407	IPR000504	GO:0003723
	Accr1g02448	702	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	222	242	IPR000571	GO:0046872
	Accr1g02448	702	Gene3D	-	349	447	IPR012677	-
	Accr1g02448	702	Gene3D	-	209	282	-	-
	Accr1g02448	702	MobiDBLite	consensus disorder prediction	64	95	-	-
	Accr1g02448	702	MobiDBLite	consensus disorder prediction	511	563	-	-
	Accr1g02448	702	MobiDBLite	consensus disorder prediction	514	563	-	-
	Accr1g02448	702	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	357	428	-	-
	Accr1g02448	702	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	350	426	IPR000504	GO:0003723
	Accr1g02448	702	SUPERFAMILY	CCCH zinc finger	220	242	IPR036855	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr1g02448	Accr-Chr1	60219535	60222498	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr1g02448	-		-	gmx:100801341	969.148

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Accr1g02448	1	60219535	60222498	Accr1g02448	1	60219535	60222498	ECH