Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02436 ATGAGTGATTCAAAGGTGCTGTTATTTGGATCATTTTCTGAAGATGAAACCAGATCATTGCTATTAAAACAGACTTGTGGTGGCAATAAAAAGCCTTTACAGAAGAATCAGCTGCAGTTTGGTTCTCTGAACTTTTCAACTGAAGGATCTTCTGGTGAATCAAGCAAGTTGCCAAAATCCACGAAAATACCAGATAGTGCCCCTACCTCTGATTCTCATGTGAGTGATGAAAAGAACAAAGTTAGTACAGTCTGTGATAAATTACCTGGAGTATTACCAAAAGTATCAGAGAGTATTCCCCCCTCTGATTCTCCTAAATGCAATGGAGTGAATAATTTTAATATAGTCAGTAATAATATACCTGGGGTATCAGGAACAATAAAAGAGAATGGAAGCGTTGCCGGTCTCTTCACTGGTCCCACGCATACAGTTGATGTAAATGAAGTTAAAAAGGAAAATGCCTTGCACACTGTGCCCTCTGATTTAGATGGCCCCTTGAATCAGTTTGCAAGTTTGAAACTGGATGATTCTGAGATTGGAAACCTGAATCATGTAGAGAAAAATGGGAGTCTTGATCAGGACCCCAAGAATGCATCAAATGGGCATGTCACACTCTCTAAAGAGCTCCTTCCTCGAGGCCTTATTAACTCTGGAAGAAACCTGTGCTTCCTAAATGCAACTTTGCAGGCTCTCTTGTCTTGCTCTCATTTTGTTCAGCTTTTGCAAGAACTAAGAACCTGCGAGATTCCTAAGGCTGGCTATCCAACATTGACTGCATTTGTTGAGTTTATTGCTCAATTTGACATGCCAAATAACACAAATTTAAAGAAGAAAGATGCTGCTCTTGAGACAGGAAGGCCGTTTTGCGCTGTCATGTTTGAAGGGGTTCTGGAAAATTTTACTCCAGATGTGCCAAATAGCATATCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTAGTGAAGCTTAAAGGACAGTCAAGTGTTAATGGGGGCAACTCATCCCTAGTTTCTTCTGTGGAAGATGATGAGTGGGAGACAGTTGGACCAAAGAACAAATCTGCTGTCACAAGGACTCAAAGCTTCCCTGCTTCTGAATTGAGTGAAATTTTTGGAGGGGAATTAAAAAGCTTGGTGAAAGCTACAGGAAATCGACCTTCGGCAACTATTCAACCATATCTTCTGCTCCACCTCGACATTTACCCTGATGCTGTTAACACCATTGAGGACGCACTTCACTTGTTTTCTGCACCTGAAACTCTTGAAGGTTTTCGAACATCAGTTAGTGGAAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTACAGATACATAAGCTTTCCAAGATAATGATATTGCACCTAATGCGTTTTAGTTATGGAAGCCAGGGAAGCACTAAACTGGATAAGCCAGTGCATTTTCCTCTTGAGTTGATGTTGGGTCGTGATTTGCTTGCATCACGAACTGCTGAGAGTCGTAGATATGAGCTTGTTGCTACAATAACTCACCATGGATCGGAGCCTTCAAAGGGCCACTACACGGCTGATGCTCGACACTCCAATGGTCAGTGGCTACGGTTTAATGATGATAAAGTTTTTGCCATAGGAGAAAAGATGGTGTTGCATGATCTAGCATATGTTCTTTTCTACAAACAAGTGTAA 1695 0.413 MSDSKVLLFGSFSEDETRSLLLKQTCGGNKKPLQKNQLQFGSLNFSTEGSSGESSKLPKSTKIPDSAPTSDSHVSDEKNKVSTVCDKLPGVLPKVSESIPPSDSPKCNGVNNFNIVSNNIPGVSGTIKENGSVAGLFTGPTHTVDVNEVKKENALHTVPSDLDGPLNQFASLKLDDSEIGNLNHVEKNGSLDQDPKNASNGHVTLSKELLPRGLINSGRNLCFLNATLQALLSCSHFVQLLQELRTCEIPKAGYPTLTAFVEFIAQFDMPNNTNLKKKDAALETGRPFCAVMFEGVLENFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELVKLKGQSSVNGGNSSLVSSVEDDEWETVGPKNKSAVTRTQSFPASELSEIFGGELKSLVKATGNRPSATIQPYLLLHLDIYPDAVNTIEDALHLFSAPETLEGFRTSVSGKAGVVTARKSVQIHKLSKIMILHLMRFSYGSQGSTKLDKPVHFPLELMLGRDLLASRTAESRRYELVATITHHGSEPSKGHYTADARHSNGQWLRFNDDKVFAIGEKMVLHDLAYVLFYKQV 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02436 564 MobiDBLite consensus disorder prediction 344 371 - -
Accr1g02436 564 MobiDBLite consensus disorder prediction 27 80 - -
Accr1g02436 564 Pfam Ubiquitin carboxyl-terminal hydrolase 213 561 IPR001394 GO:0004843|GO:0016579
Accr1g02436 564 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 506 524 IPR018200 GO:0004843|GO:0006511
Accr1g02436 564 SUPERFAMILY Cysteine proteinases 208 563 IPR038765 -
Accr1g02436 564 Gene3D Cysteine proteinases 201 564 - -
Accr1g02436 564 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 75 564 - -
Accr1g02436 564 MobiDBLite consensus disorder prediction 27 70 - -
Accr1g02436 564 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 212 564 IPR028889 -
Accr1g02436 564 FunFam Ubiquitin carboxyl-terminal hydrolase 203 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02436 Accr-Chr1 60070019 60074895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02436 209 564 Miscellaneous Gene Families AT2G24640 28.219 2.58e-18 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02436 K11841 - gmx:100816791 680.248