Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02434 ATGACGGTTTCCTCTGTTTCAAGATCCAGTCTTTCTACTCCATTTCTCCCTCCTCCATCTTCGTCTTCTCAAAGCAGTACTAGTGACAGCATTAGTGACACCGACGATGGCAGCAGCATTAGCCCTCTTTCATCTAATCGATTCGATGCCCTTGACGTCAAAAAGTTTCAACTTTCTTCCATGCCTGCTTCTGGGTTTTCTTCGCACCGATCCTTGGCTGTTCTCTCTGGTCATATTGGCTCTGTTTCTTGCTTGGCCTTGTGCGGCGAGTTCATCCTCAGTGCTTCTCAAGGAAAGGACATCATCGTATGGCAACAGCCTGATTTGAGGGTTTTCACAAAATTCGGACAGGGAGATGGATCCGTCAAAGCCCTTGTCTCAGTCGGCGACAAGGTTTTCACGGCGCATCAGGATAGCAGAATCAGAGTCTGGAAGGTTTCCAGAAGCTCCGAAAACGTGTTCAGGCTCGTTGATTCGTTGCCGACAACGAAGGACTATTTGGGGAAATTCATGAAGCAGAGCAACTACGTCCAAACCAGAAGGCACCACAAGAAACTATGGATCGAACATGCAGATAGCATCTCATGCTTGACAGTTTGTAACGGCCTAATCTACTCTGGTTCGTGGGATAAGACCCTTAAGGTATGGAGGCTCTCAGATTTGAAGTGCTTGGAATCCATTAAAGCTCACGACGATGCCATCAATGGCTTGGTTTCTTGTAAAGAGGTTGTGTATTCTGCTTCTGCAGATGGAAAGATCAAAGCTTGGACACAAGGGAAAGAGAAGAAAAAACATTGTTCAAAAGGGATTCTAGAGGGTCATAAAGATGTTTCATTCAATTCTGTGGTTGTTTCTGATGATGGAAAGTGGGTATATGGAGGAGGATCAGATGGGTATATAATAGGATGGGAAACCAATATTTATAACAGTAATAGTGGGAATTCTTCTGGTAAGAGTAATTGGAATCTAGTTTCAGAAACAAAAGCACATGAGATGGCTGTATTGTGTATGTGTTTAATGGGGGAGTTTTTATTCAGTGGATCAGCAGATAAGAGTATTGTTGTTTGGAGGAGAGAGGCATTTGGGAATCTTTGTAAATTAGAGATCATATATGGCCATGAAGGACCAGTGAAGTGCTTGCAGGCAAGTTCTGATAGAATTGGAGGTGGGTTTTTGCTCTATAGTGGAAGTCTTGATAAAAGCTTGAGGGTTTGGTGGGTTCCTAGCTACAGTGATGAAACACAGGACAAGTCAACGACAATAATTCCACCAAGCTCTCTCAACAACAGAACCATTGTCGGATAA 1305 0.4368 MTVSSVSRSSLSTPFLPPPSSSSQSSTSDSISDTDDGSSISPLSSNRFDALDVKKFQLSSMPASGFSSHRSLAVLSGHIGSVSCLALCGEFILSASQGKDIIVWQQPDLRVFTKFGQGDGSVKALVSVGDKVFTAHQDSRIRVWKVSRSSENVFRLVDSLPTTKDYLGKFMKQSNYVQTRRHHKKLWIEHADSISCLTVCNGLIYSGSWDKTLKVWRLSDLKCLESIKAHDDAINGLVSCKEVVYSASADGKIKAWTQGKEKKKHCSKGILEGHKDVSFNSVVVSDDGKWVYGGGSDGYIIGWETNIYNSNSGNSSGKSNWNLVSETKAHEMAVLCMCLMGEFLFSGSADKSIVVWRREAFGNLCKLEIIYGHEGPVKCLQASSDRIGGGFLLYSGSLDKSLRVWWVPSYSDETQDKSTTIIPPSSLNNRTIVG 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02434 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 405 IPR001680 GO:0005515
Accr1g02434 434 FunFam BnaA09g28200D protein 177 261 - -
Accr1g02434 434 SUPERFAMILY WD40 repeat-like 71 410 IPR036322 GO:0005515
Accr1g02434 434 Gene3D - 269 429 IPR015943 GO:0005515
Accr1g02434 434 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 226 IPR001680 GO:0005515
Accr1g02434 434 MobiDBLite consensus disorder prediction 1 43 - -
Accr1g02434 434 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 12 409 IPR045182 -
Accr1g02434 434 Gene3D - 175 268 IPR015943 GO:0005515
Accr1g02434 434 SMART WD40_4 320 357 IPR001680 GO:0005515
Accr1g02434 434 SMART WD40_4 108 145 IPR001680 GO:0005515
Accr1g02434 434 SMART WD40_4 68 105 IPR001680 GO:0005515
Accr1g02434 434 SMART WD40_4 179 217 IPR001680 GO:0005515
Accr1g02434 434 SMART WD40_4 264 304 IPR001680 GO:0005515
Accr1g02434 434 SMART WD40_4 363 406 IPR001680 GO:0005515
Accr1g02434 434 SMART WD40_4 220 257 IPR001680 GO:0005515
Accr1g02434 434 Pfam WD domain, G-beta repeat 189 216 IPR001680 GO:0005515
Accr1g02434 434 Pfam WD domain, G-beta repeat 369 405 IPR001680 GO:0005515
Accr1g02434 434 Pfam WD domain, G-beta repeat 322 356 IPR001680 GO:0005515
Accr1g02434 434 Pfam WD domain, G-beta repeat 269 303 IPR001680 GO:0005515
Accr1g02434 434 Gene3D - 52 170 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02434 Accr-Chr1 60064238 60065542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02434 177 410 Miscellaneous Gene Families AT5G08390 22.634 8.85e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02434 - - qsa:O6P43_001428 600.127