Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01788 ATGGCAACCAAACTCCTCCCTCAAACTCGCTTTCCCCGTAACCGTCTCCGAAAGAATCCTTGCTCATCATCGCTTCCTCAATCTTATACTACCTTTTCGACCAATCACCCTCTTTTCTATACCTTTCATGTCTCTGCTTTCCCTTCTAATTTGTGCCTTAAAACTTCGAGGAATCGTAGCAATTTGTTGGTGACCTCTTGCGTTAATAGGACTCAAGAACTCACTGATGTTGACCGCGAAACTTCACTTGAAAATGAAGATCACGTGGAAGAGAATTCTCGAGAACAAGAAGGCGAAGATGGAATGGTGGGGAATATCAAGAAGCAGGAACTGGCCGACCAGAGTATATGGGACCAGATAAAGGAAATTATCAAGTTTACTGGACCAGCAACGGGACTTTGGATATGCGGACCACTAATGAGTCTCATTGATACAGCTGTTATTGGTCAAGGAAGCTCGATTGAACTTGCTGCATTAGGCCCTGCTACAGTCGTTTGTGATTACACCAGTTACGTGTTCATGTTTCTCTCGATTGCTACCTCTAATATGGTCGCTACTGCTCTTGCTAAGCAGGATAGAGGAGAAGTACAGCATCACATATCCGTCTTGCTTTTTGTTGGGCTAGCTTGTGGCTTCGTAATGCTTTTGTTTACACGATTATTTGGTGCAGCAACACTCACTGCTTTTAGTGGGTCAAAGAATTTACATGTGGTACCTGCAGCAAACACTTATGTGCAGATTCGAGGCTTGGCATGGCCAGCATTACTTGTTGGATGGGTTGCTCAAAGTGCTAGTCTTGGCATGAAAGATTCATGGGGACCCTTGAAGGCTTTAGCTGCTGCTAGTGTTATAAATGGTGTTGGTGATATAGTTTTGTGCATCTTTTTAGGCCAAGGCATTGCTGGGGCTGCTTGGGCTACAATGGCTTCACAAGTTGTTGCTGCTTACATGATGATTCAGACTCTAAATGAAAAGGGATACAATGCATTTGCCTTCTCTGTCCCTTCAGTCCAGGAGATTTGTTCAATACTTGGGCTTGCTGCTCCTGTATTTGTGACAATGATGTCAAAGGTGGCTTTCTACTCGTTGCTTATATATTTTTCTACATCAATGGGCTCACATACAATGGCTGCTCATCAAGTCATGGTTCAAACCTTCTGCATGTGTACAGTATGGGGTGAGCCGCTTTCTCAAACTGCTCAGTCATTTATGCCTGAATTGATATCTGGGGTCAATCGTAGCTTGGAAAAGGCTAGAGTACTTCTGAAGTCTCTTGTAATAATTGGAACTACACTCGGATTTCTATTAGGGATTGTTGGAACATCAGTTCCTTGGCTATTCCCCAACATTTTTACACCTGATCAGATAGTCATCCAAGAGATGCATAAGGTGCTCATTCCATACTTCATAGCACTAGCTGTGACACCCGCTACCCACAGCCTTGAAGGAACATTGCTGGCTGGACGTGATCTAAGATTTATAAGTCTGTCAATGAGTGGATGCTTTACTTTAGGCGCACTTGTATTACTGATATTGAGCGGCAGATATGGCTTGCAAGGCTGTTGGTTTGCCCTCGCAGGATTTCAATGGGCTCGGTTTTCAATTGCCCTCCAGCGCCTTCTCTCTCCCAATGGCATGTTATACTCTGAAGAATTTGGGCAGTATAAGCAGAAGAAGCTAAGGACTGCATAG 1692 0.4403 MATKLLPQTRFPRNRLRKNPCSSSLPQSYTTFSTNHPLFYTFHVSAFPSNLCLKTSRNRSNLLVTSCVNRTQELTDVDRETSLENEDHVEENSREQEGEDGMVGNIKKQELADQSIWDQIKEIIKFTGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPATVVCDYTSYVFMFLSIATSNMVATALAKQDRGEVQHHISVLLFVGLACGFVMLLFTRLFGAATLTAFSGSKNLHVVPAANTYVQIRGLAWPALLVGWVAQSASLGMKDSWGPLKALAAASVINGVGDIVLCIFLGQGIAGAAWATMASQVVAAYMMIQTLNEKGYNAFAFSVPSVQEICSILGLAAPVFVTMMSKVAFYSLLIYFSTSMGSHTMAAHQVMVQTFCMCTVWGEPLSQTAQSFMPELISGVNRSLEKARVLLKSLVIIGTTLGFLLGIVGTSVPWLFPNIFTPDQIVIQEMHKVLIPYFIALAVTPATHSLEGTLLAGRDLRFISLSMSGCFTLGALVLLILSGRYGLQGCWFALAGFQWARFSIALQRLLSPNGMLYSEEFGQYKQKKLRTA 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01788 563 Pfam MatE 137 288 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Accr1g01788 563 NCBIfam MATE family efflux transporter 131 522 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Accr1g01788 563 CDD MATE_DinF_like 121 542 IPR044644 -
Accr1g01788 563 Coils Coil 556 563 - -
Accr1g01788 563 MobiDBLite consensus disorder prediction 78 103 - -
Accr1g01788 563 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 66 545 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01788 Accr-Chr1 48135345 48139556 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01788 K03327 - qsa:O6P43_011547 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g01788 1 48135345 48139556 Accr1g01788 1 48135345 48139556 ECH