Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g01254 ATGGCTTCTTCTGTTCTCTCTTCTGCCGCCGCTACCGTCGCCGCCCCCGCCCAGATCAACAAGATCCCCGCCTACACCGGTCTCAAGGTTGGCGCCGGCTTGCCAGTGAGCAAGAAGGCCATTAACACAGACATCACCTCCCTTGCTAGCAACGGCGCGAGAGTAACCTGCATGCTGGTGTGGCCCCCACTGGGGAAGAAGAAGTTTGAGACCCTCTCATACCTGCCACCTCTTACCCCTGAGTCTCTGCTGAAGGAAGTAGACTACCTTCTTAGAAAGGGATGGGTTCCTTGCTTGGAGTTCGAAGTTGGAAACGCATTTGTGTACCGTGAGAACCACAGGTCACCAGGGTACTATGATGGAAGATACTGGACAATGTGGAAGCTGCCCATGTTCGGATGCACAGACGCAACTCAGGTGTTGAAGGAGCTGGAGGAGGTCAAGAAGGAGTACCCTCAGGCTCACGCCAGAATCATCGGCTTCGACAACGTTCGCCAAGTCCAGTGCATCAGCTTCATCGCCTACAGGCCTCCCCCGCCTCCCCCCAAGCCTTGA 555 0.5604 MASSVLSSAAATVAAPAQINKIPAYTGLKVGAGLPVSKKAINTDITSLASNGARVTCMLVWPPLGKKKFETLSYLPPLTPESLLKEVDYLLRKGWVPCLEFEVGNAFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEVKKEYPQAHARIIGFDNVRQVQCISFIAYRPPPPPPKP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g01254 184 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC 1 178 IPR024681 -
Accr1g01254 184 PRINTS RuBisCO small subunit signature 18 35 IPR024681 -
Accr1g01254 184 PRINTS RuBisCO small subunit signature 67 93 IPR024681 -
Accr1g01254 184 PRINTS RuBisCO small subunit signature 46 64 IPR024681 -
Accr1g01254 184 PRINTS RuBisCO small subunit signature 117 146 IPR024681 -
Accr1g01254 184 PRINTS RuBisCO small subunit signature 151 177 IPR024681 -
Accr1g01254 184 PRINTS RuBisCO small subunit signature 95 110 IPR024681 -
Accr1g01254 184 Hamap Ribulose bisphosphate carboxylase small subunit [cbbS]. 67 178 IPR000894 -
Accr1g01254 184 CDD RuBisCO_small 67 176 IPR000894 -
Accr1g01254 184 FunFam Ribulose bisphosphate carboxylase small chain, chloroplastic 58 180 - -
Accr1g01254 184 Pfam Ribulose-1,5-bisphosphate carboxylase small subunit 2 42 IPR024680 -
Accr1g01254 184 Gene3D Ribulose bisphosphate carboxylase, small subunit 58 182 IPR036385 -
Accr1g01254 184 Pfam Ribulose bisphosphate carboxylase, small chain 69 177 IPR000894 -
Accr1g01254 184 SUPERFAMILY RuBisCO, small subunit 58 178 IPR036385 -
Accr1g01254 184 SMART RuBisCO_small_2_a 68 177 IPR000894 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g01254 Accr-Chr1 36359520 36365532 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g01254 K01602 - qsu:112027225 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g01254 1 36359520 36365532 Accr1g01254 1 36359520 36365532 ECH