Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g00221 ATGTCTCGGATATTCTCGAGATGGAAGAAGGTGAAAGAGATGGCGATGATTTCTTCTACAGAGACTCAGTTCGGTGTCTCTGTAAAAAATGGTCATAAATGGACAAGGTTCAATTTTCGATTCAATCAGGTTTGCCCAATCTCGACTCACCTAAATTATTTTCCCATCGCCACCTATAGACGGCGGGAATCGTTCATCAACGTTCAGGAGCGGTACAAATGGGACCACGGTGGCTCCAGCGACACCCGCAATCGGAATTCTCATGCCCGAAAGATTCGAGCCGATGCTAATTGCCCACGGTGCGCCAGGAACATGGATGTATTTTTCTCCAATCGCCATTTTCCTAGTTCTACTTCTGATTTCAATTTGATTCCTTCGGTTCCTCTCCAAGAAGGAGGAGGTCATCAAACTATGAGTCTCTGCCCCAATTGTAAAACAGCTTATTTCTTCAGCCCTTTTGGAACTGCTCCTATCCAAGGTACATTTGTGGAGATTGGTCGGGTCATAGATAGTAAAGTTAATAATACTAGCAATAAGTTGCAGAAGAGGATATCCAATGGCAAAGTCAAAGATGACAGAGAAAGTAATAATAGTCATGGAAGTAATGGTGTAGCAGAAGATTATGCCAATAGAAGTGACAGCAATAATGCGGCATTCTGGCATAACTTAAGATCCTATAGTGATGGAGATGGTGGAGAACCACCAGAAACTTGGTCTCCTCCACCTGGTTCTTCAAATGGGAATGGGATTGCTGTGCATACTCCTCCAGGCCCACCTTTTGCACCTGGCCTTAATGTTGTTCGGGCTTCAGGGCCACGGGAGGGTGGTTCAAGTGGTGGAGGTGGCGGTAATGGAGAAAAGACAACATGGGGAGGGTCCAATTTGGGTAAGGATTTACCCACACCTAAGGAGATCTGCAAGGGTCTTGATAAGTTTGTTATTGGCCAGGAGAGGGCCAAAAAGGTGCTTTCTGTAGCTGTGTATAATCACTATAAAAGAATACACCATGCCTCATTACAGAAAGGGTCAGGGGCAGATTCAGCAAATCCAAAACCTGTAGATGATGACGATAATGTGGAGCTAGAAAAGAGTAATGTTCTCCTGATGGGTCCAACTGGTTCAGGGAAGACATTGCTTGCAAAAACTCTAGCTCGATTTGTGAACGTTCCATTTGTCATTGCTGATGCAACAACCTTAACACAGGCTGGTTATGTTGGAGAAGATGTCGAATCAATATTGTATAAACTACTTGTGGCAGCTGAGTTCAATGTCCAAGCCACTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACTAAGAAGGCTGAAAGCTTAAATATTAGCCGGGATGTTTCTGGCGAGGGTGTTCAGCAGGCACTACTAAAAATGTTGGAAGGAACAATAGTAAATGTTCCTGAAAAAGGTGCAAGGAAGCATCCACGGGGCGATAACATCCAGATTGACACAAAGGATATTCTTTTTATATGCGGTGGAGCATTCGTTGATCTTGAAAAAACAGTATCAGAGAGACGACAAGATTCTTCAATTGGTTTTGGAGCTCCAGTTCGTGCAAATATGAGAACCAATAAAGTAATAAATGTTGAAGTAACATCAGCATTACTTGAGTCGGTGGAAAGTTCTGATCTTATTGCATATGGTCTCATACCTGAGTTCATTGGACGGTTTCCAATCTTAGTCAGTTTATCCGCCTTAACACAAGATCAACTTGTGCAGGTCCTCACAGAACCAAAGAATGCTCTTGGTAAGCAGTACAAGAAATTAATTGGAATGAATAATGTTAAGCTTCATTTCACGGAGAAGTCAATGAGATTGATTGCACAGAAAGCAATGGCCAAGAACACTGGCGCCAGGGGTTTAAGAGCTATACTGGAAGGCATCCTAACTGATGCTATGTTTGAGATTCCAGATGTTATGACTGGAAGTGATCGGATCGATGCGGTAGTCGTCGATGATGAGTCAGTAGGATCAGTAGATGCCCCAGGATGTGGTGGCAAAATTCTTCGTGGGCGTGGTGCTTTAGAGGCTTACCTTGCAAAGACGAAGGACACAGTGGTGAATGGTGAGGTAGCTGAATCAGATGTACAAGAGGGGGAAACAGAGAGAGCCATGAGCATGTGA 2145 0.4368 MSRIFSRWKKVKEMAMISSTETQFGVSVKNGHKWTRFNFRFNQVCPISTHLNYFPIATYRRRESFINVQERYKWDHGGSSDTRNRNSHARKIRADANCPRCARNMDVFFSNRHFPSSTSDFNLIPSVPLQEGGGHQTMSLCPNCKTAYFFSPFGTAPIQGTFVEIGRVIDSKVNNTSNKLQKRISNGKVKDDRESNNSHGSNGVAEDYANRSDSNNAAFWHNLRSYSDGDGGEPPETWSPPPGSSNGNGIAVHTPPGPPFAPGLNVVRASGPREGGSSGGGGGNGEKTTWGGSNLGKDLPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIHHASLQKGSGADSANPKPVDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLVAAEFNVQATQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKDILFICGGAFVDLEKTVSERRQDSSIGFGAPVRANMRTNKVINVEVTSALLESVESSDLIAYGLIPEFIGRFPILVSLSALTQDQLVQVLTEPKNALGKQYKKLIGMNNVKLHFTEKSMRLIAQKAMAKNTGARGLRAILEGILTDAMFEIPDVMTGSDRIDAVVVDDESVGSVDAPGCGGKILRGRGALEAYLAKTKDTVVNGEVAESDVQEGETERAMSM 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g00221 714 MobiDBLite consensus disorder prediction 339 358 - -
Accr1g00221 714 Gene3D - 293 571 IPR027417 -
Accr1g00221 714 SMART ClpB_D2_small_2 573 664 IPR019489 -
Accr1g00221 714 MobiDBLite consensus disorder prediction 180 210 - -
Accr1g00221 714 Pfam C-terminal, D2-small domain, of ClpB protein 573 642 IPR019489 -
Accr1g00221 714 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 296 665 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Accr1g00221 714 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 656 IPR027417 -
Accr1g00221 714 Gene3D - 572 672 - -
Accr1g00221 714 CDD RecA-like_ClpX 300 570 - -
Accr1g00221 714 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 94 691 - -
Accr1g00221 714 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 293 571 - -
Accr1g00221 714 MobiDBLite consensus disorder prediction 222 297 - -
Accr1g00221 714 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 572 675 - -
Accr1g00221 714 SMART AAA_5 362 540 IPR003593 GO:0016887
Accr1g00221 714 Pfam AAA domain (Cdc48 subfamily) 362 566 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g00221 Accr-Chr1 3984360 3992759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g00221 366 465 Miscellaneous Gene Families AT3G02450 36.634 7.27e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g00221 K03544 - qsa:O6P43_005462 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr1g00221 1 3984360 3992759 Accr1g00221 1 3984360 3992759 ECH