Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01649 ATGGCCGATGAAGATTCAAAGCCAACCCTTTCTGTCACCGAGAAGGAAGAATTAGAGCCGCCGAAGGTTGCGGCGGAGTCTGTTTCACCCGCTGTAGCATCTGGCTCAACTATCGAATCCGACTCGGCGGCGGCCAATCCTGAAAAAACAGAACTGCCTCCTCCACCGCCGTCGGAATCACCGGCAGAAAAAGCTACTTCGGTTGTAGAGACAGAGCCGTCGCCGCCGCCAACCACTGAAGACAACGATGTAAAAGATAAAAGTTCAGACACTAAAGAGGATGCTGGTGAGGCTCAGGATGAGAGATCGAGTAAGTTGCCTCAGAACTTGGTTTCGTTCAAGGAAGAAAGCAATTTAGTGGCTGATCTCTCAGATTCTCAGATAAATGCTCTTGAAGAGTTGAAGAAGCTGGTTCGAGAGGCACTAGACACTCATCAGTTCACTTCTTCGGAACCAATCAAAACGACGTCGGTGCCGCCTGAAACCACCCCGGCGGCTAAGGAAGCTACAAAAGCTGAAGGAGCCACTTCGGAATCAGATGCCAGCACCGAGGTACATCCACCGCCTGAAACCAAAATTGAAGAAAGCCCAGTGAAGGAAGCAGAGGAAGTAGCGAAAGAAACATCTGAGGAACATGTTTTCATATGGGGAATTCCTCTGCTCAAGGATGACAGGAGTGATGTGATTCTGCTCAAGTTTCTTAGAGCCAGAGATTTCAAAGTTAAGGATGCATTTACCATGATGAAGAACACGCTAAGCTGGAGGAAAGAGTTCAACATTGATGCACTTGTGAATGAAGATCTAGGGGATGATCTGGAGAAAGTGGTGTTCATGCACGGTTATGATAGGGAAGGACATCCCGTTTGTTATAATGTCTATGGAGAATTTCAGAACAAGGAGTTGTACCAGAAGACATTCTCAGATGAAGAGAAACGAACCAAGTTCCTCCGGTGGCGGATACAATTTTTGGAGAGGAGTATTAGGAAGCTTGATTTTACTCCTGGTGGTGTCAATACCATTTTCCAAGTTAACGACCTTAAAAATTCTCCTGGGCCTGCCAAGCGGGAGCTTCGACTTGCCACCAAACAAGCTTTGCAATTGCTTCAGGACAATTATCCCGAGTTTGTTGCCAAACAGGTTTTTATCAATGTGCCATGGTGGTATCTTGCATTCTATACTATGCTCAGTCCATTCTTGACCCAGAGGACCAAAAGCAAATTTGTTTTTGCAGGCCCACCAAAGTCTGCTGAAACACTTTTCAAGTATATTTCTCCTGAGCAAGTGCCAATCCAATATGGTGGTCTAAGTGTTGATTTATGTGACTGCAACCCAGAATTCAGCATGTCTGATCCAGTCACAGAGATACCTATAAAACCAACCACAAAGCAAACTGTGGAAATCATTATTTATGAGAAATGCATTATTGTGTGGGAGCTGCGAGTTGTGGGCTGGGAGGTCAGCTATAGTGCGGAATTCAAACCTGATGCAAAAGATGGATATACAATTATCATACAGAAGGCCACAAAGATGTCCCCAAATGATGAGCCAGTGGTTTCCAATAGCTTTACAGTTAGTGAACTGGGCAAGATATTGCTTACCATTGACAATTCCACTTTGAAAAAGAAGAGACTTCTGTACAGGTTCAAGATCAAACCTCTCAGTGATTAA 1668 0.4502 MADEDSKPTLSVTEKEELEPPKVAAESVSPAVASGSTIESDSAAANPEKTELPPPPPSESPAEKATSVVETEPSPPPTTEDNDVKDKSSDTKEDAGEAQDERSSKLPQNLVSFKEESNLVADLSDSQINALEELKKLVREALDTHQFTSSEPIKTTSVPPETTPAAKEATKAEGATSESDASTEVHPPPETKIEESPVKEAEEVAKETSEEHVFIWGIPLLKDDRSDVILLKFLRARDFKVKDAFTMMKNTLSWRKEFNIDALVNEDLGDDLEKVVFMHGYDREGHPVCYNVYGEFQNKELYQKTFSDEEKRTKFLRWRIQFLERSIRKLDFTPGGVNTIFQVNDLKNSPGPAKRELRLATKQALQLLQDNYPEFVAKQVFINVPWWYLAFYTMLSPFLTQRTKSKFVFAGPPKSAETLFKYISPEQVPIQYGGLSVDLCDCNPEFSMSDPVTEIPIKPTTKQTVEIIIYEKCIIVWELRVVGWEVSYSAEFKPDAKDGYTIIIQKATKMSPNDEPVVSNSFTVSELGKILLTIDNSTLKKKRLLYRFKIKPLSD 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01649 555 PANTHER PATELLIN-1 79 552 IPR044834 GO:0008289
Accr13g01649 555 SUPERFAMILY CRAL/TRIO N-terminal domain 118 266 IPR036273 -
Accr13g01649 555 SUPERFAMILY CRAL/TRIO domain 275 444 IPR036865 -
Accr13g01649 555 MobiDBLite consensus disorder prediction 148 163 - -
Accr13g01649 555 MobiDBLite consensus disorder prediction 1 22 - -
Accr13g01649 555 SMART sec14_4 270 437 IPR001251 -
Accr13g01649 555 Gene3D - 148 445 IPR036865 -
Accr13g01649 555 Gene3D GOLD domain 446 551 - -
Accr13g01649 555 MobiDBLite consensus disorder prediction 148 198 - -
Accr13g01649 555 MobiDBLite consensus disorder prediction 30 44 - -
Accr13g01649 555 MobiDBLite consensus disorder prediction 1 110 - -
Accr13g01649 555 FunFam SEC14 cytosolic factor family protein 270 450 - -
Accr13g01649 555 ProSiteProfiles GOLD domain profile. 445 550 IPR009038 -
Accr13g01649 555 MobiDBLite consensus disorder prediction 79 101 - -
Accr13g01649 555 SMART CRAL_TRIO_N_2 226 251 IPR011074 -
Accr13g01649 555 Pfam CRAL/TRIO, N-terminal domain 211 250 IPR011074 -
Accr13g01649 555 CDD SEC14 271 435 IPR001251 -
Accr13g01649 555 PRINTS Cellular retinaldehyde-binding protein signature 229 251 - -
Accr13g01649 555 PRINTS Cellular retinaldehyde-binding protein signature 392 411 - -
Accr13g01649 555 Pfam CRAL/TRIO domain 275 434 IPR001251 -
Accr13g01649 555 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 265 440 IPR001251 -
Accr13g01649 555 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01649 Accr-Chr13 31028264 31030207 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g01649 230 429 Acyl Lipid Metabolism Gene Families AT1G55840 27.778 4.32e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01649 - - qsa:O6P43_029974 752.666