Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g01544 ATGTCGTTTCACGTGGAGGACGAGGACGAGGAGAAGAACCCTAGCCCTAGCCCTAGTCCTCGATTGAGGAAGAAGAGACCATCTAGCTGGTCCAACGTCTGGCTTAAGAACACCAAGCCTCTCAAGCATATGGTGGTCGCCATGCAAGTCCAGTCCCTATCTCCTCCCGACGACCCCAAATCCAAAGCCCTAACTCCCAATATTTTCCCAATTGACTCAACCCTTCTTTTGTCCGACGAGATTCTTCTCAGAATCTTCGGTAAGCTCCCTGATTCGCAGAGGAAGTCCATTTCTCTTGTCTGCAAACGGTGGTTGAATCTGCAGGGGCGGCTTGTACGGACCCTCAAAGTGCTTGACTGGAACTTCGTTTTATCTGGTAGTTTGATTCATAGATTCCCCAATTTAAACCATGTAGATTTGATCCCTGGGTCGTTCATTTCGCCGCGGAATTCGGGTATTTTTCTGAGTCACCGACTTGTTTCAATGCATATAAATTGTGGATTTTATCCCAATTGGTGTTTTGGGGAGGAGAAAAATCTGCTTCCTGTTGATGTTATCGATAGTGGTTTGAAAGTTCTTGCTAGTGGGTGTCCCAATTTGCGTAATTTGCATGTCATTGGTGCTAGTGAAGTTGGTTTATTGAGTGTGGCTGAGGAGTGTCCGACGTTGCAAGAGTTGGAATTGCAGAAATGCGATGACAATGTGCTGCGAGGGATTGCGGCGTGTCAGAATCTGCAGATCTTGAAATTGATTGCAAATGTTGATAGTTTCTACAGCTCAGTGGTCTCTGATATTGGATTGACTATTCTGGCTCAAGGTTGCAAGAGACTTGTCAAGCTTGAGCTTAGTGGTTGTGAAGGTAGCTTTGATGGGATCAAAGCAATAGGAACATGTTGTCAAATGTTGGAGGAATTGACTTTATCAGATCATAGAATGGATGATGGTTGGTTGGCAGCACTTTCGTTTTGTGAGAACTTAAAGACTTTGAGGATCCAATCATGTAAATGGATCGATCTACATCCTGGACCTGAGGAGCATTTGGGTTCATGCTTTGCACTTGAACGGTTGCATTTGCAAAAGTGCCAGTTACGGGACAAAAATGGCATTGGAGCTGTATTTGGGGTATGCAGGGCTGCAAGAGAGATTATCATCCAGGATTGCTGGGGATTGGATGATAGTATGTTCAGTTTTGCAAGCATCTGCAGGCGGGTGAAGCTTCTAAGCTTAGAAGGGTGTTCATTGCTAACAACAGAAGGTTTAGAGTCTGTAATTCAATCCTGGAAGGAGCTTCAGAGCCTTAGAGTAGTTTCCTGTAAGAACATAAAGGATAGTGAAATCTCACCCTCTCTAGCAACAATATTCACCACACTTAAAGAATTAAGATGGAGGCCAGATACCAAGTCTCTTCTTCCGTCAAGTCTAATGGAGGTAAGCATGGGCAAGAGGGGAGGTAAATTTTTCAGAAGAACTTGA 1473 0.4453 MSFHVEDEDEEKNPSPSPSPRLRKKRPSSWSNVWLKNTKPLKHMVVAMQVQSLSPPDDPKSKALTPNIFPIDSTLLLSDEILLRIFGKLPDSQRKSISLVCKRWLNLQGRLVRTLKVLDWNFVLSGSLIHRFPNLNHVDLIPGSFISPRNSGIFLSHRLVSMHINCGFYPNWCFGEEKNLLPVDVIDSGLKVLASGCPNLRNLHVIGASEVGLLSVAEECPTLQELELQKCDDNVLRGIAACQNLQILKLIANVDSFYSSVVSDIGLTILAQGCKRLVKLELSGCEGSFDGIKAIGTCCQMLEELTLSDHRMDDGWLAALSFCENLKTLRIQSCKWIDLHPGPEEHLGSCFALERLHLQKCQLRDKNGIGAVFGVCRAAREIIIQDCWGLDDSMFSFASICRRVKLLSLEGCSLLTTEGLESVIQSWKELQSLRVVSCKNIKDSEISPSLATIFTTLKELRWRPDTKSLLPSSLMEVSMGKRGGKFFRRT 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g01544 490 MobiDBLite consensus disorder prediction 1 29 - -
Accr13g01544 490 FunFam F-box protein At5g51380 70 338 - -
Accr13g01544 490 CDD F-box_AtTIR1-like 76 110 - -
Accr13g01544 490 Gene3D Ribonuclease Inhibitor 176 255 IPR032675 -
Accr13g01544 490 Gene3D Ribonuclease Inhibitor 256 343 IPR032675 -
Accr13g01544 490 Gene3D - 73 110 - -
Accr13g01544 490 SUPERFAMILY RNI-like 259 460 - -
Accr13g01544 490 Pfam F-box-like 79 106 IPR001810 GO:0005515
Accr13g01544 490 SUPERFAMILY F-box domain 61 122 IPR036047 GO:0005515
Accr13g01544 490 SUPERFAMILY RNI-like 120 253 - -
Accr13g01544 490 MobiDBLite consensus disorder prediction 1 18 - -
Accr13g01544 490 Gene3D Ribonuclease Inhibitor 344 474 IPR032675 -
Accr13g01544 490 PANTHER UNCHARACTERIZED 76 446 - -
Accr13g01544 490 FunFam F-box protein 339 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g01544 Accr-Chr13 25894891 25897672 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g01544 K10268 - qsa:O6P43_029877 744.962