Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00896 ATGCTATACAATGGTCTCCCACTCATGCTTACAGCTCATCTCCTGGCATCTGCCGGGATGGACCATTTGGTTTGCATTTGGAATGTATGGAGTAGAGATCAAAAGAAAGCACGCGTACTAAACTTCCACAATGCAGCAGTGAAAGATGTGAAATGGTCTCAGCAAGGGCACTCTCTGCTTTCTTGTGGATATGATTGCAAATCAAGGTTGATTGATGTAGAAAAGGGGTTTGAGACTCAGGTTTTTAGTGAGGATCAAATTGTTGGAGTTATAAAATTTCATCCTGACAACTCAAACCTCTTTCTTTCTGGTGGTTCAAAAGGCCATATTAGATTATGGGATATCAGGACTGGCAAAGTAGTCCATAGCTTTAATCGCAATTTAGGTCCAATTTTGGATGTTGAGTTTACAATCGGTGGGAAGCAGTTCATTTCTTCTAGTGATGTGTCTGGGAGTAATGTCAGTGAGAACTCAATTATTGTTTGGGATGTGTCCAGACAGGTTCCGCTGTCTAGTCAGGTTTATGTTGAAGCTTACACCTGTCCGTGTGTAAGGCGCCACCCATATGAGTCGACTTTCGTTGCCCAGTCAAATGGGAATTACATTGCAATTTTTACGTCCAACCCCCCTTTCAGGCTAAACAAATACAAGAGGTATGAAAGCCACGGCGTCTCTGGGTTTCCCATAAAGTGCAATTTCAGTTTGGATGGGAAGAGGCTTGCTTCTGGTTCTTCAGATGGTTGTATTTATCTTTACGATTATCAGTCATCTAACTTTGTTCAAAAAATCAAGACGTCTGACCAAGCATGCATAGATGTTGCTTTCCATCCTGTTATGCCTAATGCTATTGCTTCATGCTCCTGGGATGGAAGCATCTCAGTATTTGAATAG 891 0.4198 MLYNGLPLMLTAHLLASAGMDHLVCIWNVWSRDQKKARVLNFHNAAVKDVKWSQQGHSLLSCGYDCKSRLIDVEKGFETQVFSEDQIVGVIKFHPDNSNLFLSGGSKGHIRLWDIRTGKVVHSFNRNLGPILDVEFTIGGKQFISSSDVSGSNVSENSIIVWDVSRQVPLSSQVYVEAYTCPCVRRHPYESTFVAQSNGNYIAIFTSNPPFRLNKYKRYESHGVSGFPIKCNFSLDGKRLASGSSDGCIYLYDYQSSNFVQKIKTSDQACIDVAFHPVMPNAIASCSWDGSISVFE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00896 296 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 11 296 - -
Accr13g00896 296 Pfam WD domain, G-beta repeat 219 253 IPR001680 GO:0005515
Accr13g00896 296 Pfam WD domain, G-beta repeat 37 70 IPR001680 GO:0005515
Accr13g00896 296 Pfam WD domain, G-beta repeat 91 114 IPR001680 GO:0005515
Accr13g00896 296 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 81 119 - -
Accr13g00896 296 SMART WD40_4 214 253 IPR001680 GO:0005515
Accr13g00896 296 SMART WD40_4 117 163 IPR001680 GO:0005515
Accr13g00896 296 SMART WD40_4 33 72 IPR001680 GO:0005515
Accr13g00896 296 SMART WD40_4 75 114 IPR001680 GO:0005515
Accr13g00896 296 SMART WD40_4 256 296 IPR001680 GO:0005515
Accr13g00896 296 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 123 IPR001680 GO:0005515
Accr13g00896 296 Gene3D - 9 296 IPR015943 GO:0005515
Accr13g00896 296 SUPERFAMILY WD40 repeat-like 12 295 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00896 Accr-Chr13 10338058 10341632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00896 14 136 Miscellaneous Gene Families AT5G08390 24.194 6.81e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00896 K24742 - lja:Lj0g3v0069539.2 515.768