Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00878 ATGCGTGCCTCCAACGCTAGAAATCTTTGTACACTGAGTGGTCTTCTCCGTTCTTCAACCGCGAAACTCAAGACTTCTAAGCCCCAATCCTATTCTCTAACTTCATCCATTTATGAAGATGGTTTTTCGGACCTTGATGGTGATTCTGACTCAACCCGCAACGCTCTCGAGTTTGAGCGTCCCTCTGATTCAGAGAAATTGCCTGACCTGGTATCTAAGCAGATTTCTTCTATGTTGTCTGATAACAAGAAAATTCCAAGAGGTCGAGTTCGAAAGCTTGCAAAATTTGAGTCTTCTACTCTAGGTTCATCCATTTTGAAAGAAGATTTTCCAGGACTTGTTGGCGAGCCTAAGCTTACAAGCTTCAAGGACCTTGACTACGCACCACTCTCTTGTTCAGAATCTGATGGAGCAGAGAAAAAAATTTCAAGAAGTCAAATTCGCTACTCTTCAAAAATGAGACCCTTTCCTAAAGCATTGTCTGTTTCGGAAGATGATTTTTCAGAACTTGACAGTGAACACAGTCCTTCTAGCCGTGAAGACCTTGACTTTGTTCAACCCTCTGTTTCAGAGAATTCACCTAATCTCTACACTGAGCAGATTAGTAATTTACTGTGTGATGATCAGCTGATCAATAGATCAGGAGATGATGTAGAAAAATTGGAAATTGCACTAGCTGTACCATGGAGACTTGACCCATTTGGTGGGAGTACATCACAGCCACAGAAAGAGAAGACTCGTGACAGAAAGAAAAAGTGGATTTTTAAACACAATCAGGAAAACCGCTTTGAAAGGGTAGTTAAATTCTGTGCTGATAAACTGGGTACAAAGGCTACTGTGGAAGTGTTAGGTAAATTGGGAAGAGAAACAGGCGTGAAAGAATACAATGCATTGATAGAAGTATGCATAAATAATGCCAGGAAAACCAATGATGAAGAAGTGGCAATTGAAGAAATGAGCAAGGCTTTTGGCCTTTTTAGAGTAATGAGAGAACAAGGTTATGAACTACAAGAGAAAACATACAGCCCTCTTCTTGTATATTTAATTGACATGGGTATGGTTGAAGAATTTCAATTATTCAGTGATGTAATCAAAGATGAGAATCCCAGTTCAGTTTCCAGATTGGGTTACTACGAAATGTTGTTATGGCTTAGAGTTGATGACAAAGAAAAGATTCAGGATCTTTGTAACTCTATTGCAGTCAATGATGGTATAGACTCTTCTGGTCTAGGAGAAAGTTATTTATTCGCATTTTGTGAAAGTGATTGGAAGGAGGGGCTTTTACAGTTGTTGGAAATTTTAGACATAACAAAGCTTTCATCTACAGAATCTGTAGCAAGTATTTTCAGATCATTGGGAAGGCTATGCCTGGACGCATATGCAGAAAAGTTCCTATCAGCTTTCAAAATTTGTGATAATGATGAAGCAAATAATGTTACAGACTTCATTGCCACTTATGTTGTTAGTCTACCAAATTTAGCGGTTGAGGATGTCATCTTGAAGTTCAAGGATTTGCACCAAAAACTGGAAGTTTCGCCTTCACCCTCATCATACGAGAAACTCATTATATATGCCTGTGACTTACTTGAGGTGCATTTTGCTCTTAAGACTGTTTGTGCAATGTGTGAAGCAGGCTTTACCTTATCTACTGAGGTGTTAAACTCCATATTACGAAGTGTTGAAGAAACATGTGAATATAATTTGGTCCACTGGATCTATTCCATAATATCTCACTACAGTTTGAAGGCAAATTGTGAAACATTTAGGTATATGATATGCTTGTGCACCAGGATGAAAGATTTTGAAAGTGCAGACAAGATGCTTGATGATTTGGAAGAAATGAATTTGAAGCCTACATCTAGCATGTACAATGCTATTATGGCTGGATATTTTAGAGAGAAAAATGTTAATGATGCTTTGAGGGTCCTTGAGCGCATGAAAGATACCAATATCAAGCCTGATTCAAGTACTTACAACCATTTGATTAGCAACTCTAAAACAGAGGAGGATATAACCAAGTATTATGAAGAAATGAAGCAGTCTAACTGCCAACCTACAAAACTTACTTTTGTGGCCCTTATAACTGCATATGCAGCCTGTGGACAGTTGGAGAAGGCAAAACAGGTGGTCTTAGATCCAGCCATTCCTGCAAAGAGCTTAAATGAAATCAAATGTGCTCTTCTCTCAACCCTTGCATCACATGGGCAATTGTCAGATTCTTTTCATATTTATGAGGAAATCAAGGAATCTGGAAACAATCTGGAGCCAAAAGCTGTTATAAGTCTTATTGAGGGACACATCAAATCTGATGAGGAGTTGGATAGATTGTTTCTGCTACTTAAAGAATTGGCTGATCCCGACTATTGGATAGATGGTTGCTTTAGAATTATTATGTTTTGTGTAGAGAACAAGCATTTAAGATCTGCTGTTGACTTGATCGAGCAACTCAATGATAAAATTCAGGATAACGAACTAGTAATGGAAGTTCTTTTGGATCAGGTGTTTTCTACAATTGCATCATCAGAGTCCACACATTTGAAGTTTGGCCTTGACCTTTATTGGCTGATCAGGGAAGTGCTTGGTATTGTGCCTTCACGGCAATGTCTGGATTTTCTTCTAACTGCTTGTGCCAATGCCAAAGATTTGGAGAACATTCGTAAAATTTGGAAAGAATACCAGCTTGCTGGATACCCTTTTAATGTCTTAAGTTACGTGAGGATGTATAGAGCTCTTTTGGTTGCAGGAGATTATGAATCTGCCCACCTTATGCTCAAGAAAATTCCAAGAGATGATCCCGATGTTCATTGCGTCGTCAAAAGAATGTCGAAAAACATACAATGA 2841 0.3861 MRASNARNLCTLSGLLRSSTAKLKTSKPQSYSLTSSIYEDGFSDLDGDSDSTRNALEFERPSDSEKLPDLVSKQISSMLSDNKKIPRGRVRKLAKFESSTLGSSILKEDFPGLVGEPKLTSFKDLDYAPLSCSESDGAEKKISRSQIRYSSKMRPFPKALSVSEDDFSELDSEHSPSSREDLDFVQPSVSENSPNLYTEQISNLLCDDQLINRSGDDVEKLEIALAVPWRLDPFGGSTSQPQKEKTRDRKKKWIFKHNQENRFERVVKFCADKLGTKATVEVLGKLGRETGVKEYNALIEVCINNARKTNDEEVAIEEMSKAFGLFRVMREQGYELQEKTYSPLLVYLIDMGMVEEFQLFSDVIKDENPSSVSRLGYYEMLLWLRVDDKEKIQDLCNSIAVNDGIDSSGLGESYLFAFCESDWKEGLLQLLEILDITKLSSTESVASIFRSLGRLCLDAYAEKFLSAFKICDNDEANNVTDFIATYVVSLPNLAVEDVILKFKDLHQKLEVSPSPSSYEKLIIYACDLLEVHFALKTVCAMCEAGFTLSTEVLNSILRSVEETCEYNLVHWIYSIISHYSLKANCETFRYMICLCTRMKDFESADKMLDDLEEMNLKPTSSMYNAIMAGYFREKNVNDALRVLERMKDTNIKPDSSTYNHLISNSKTEEDITKYYEEMKQSNCQPTKLTFVALITAYAACGQLEKAKQVVLDPAIPAKSLNEIKCALLSTLASHGQLSDSFHIYEEIKESGNNLEPKAVISLIEGHIKSDEELDRLFLLLKELADPDYWIDGCFRIIMFCVENKHLRSAVDLIEQLNDKIQDNELVMEVLLDQVFSTIASSESTHLKFGLDLYWLIREVLGIVPSRQCLDFLLTACANAKDLENIRKIWKEYQLAGYPFNVLSYVRMYRALLVAGDYESAHLMLKKIPRDDPDVHCVVKRMSKNIQ 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00878 946 Coils Coil 813 833 - -
Accr13g00878 946 Gene3D Tetratricopeptide repeat domain 667 788 IPR011990 GO:0005515
Accr13g00878 946 Gene3D Tetratricopeptide repeat domain 259 382 IPR011990 GO:0005515
Accr13g00878 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 619 653 IPR002885 -
Accr13g00878 946 MobiDBLite consensus disorder prediction 44 67 - -
Accr13g00878 946 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Accr13g00878 946 Gene3D Tetratricopeptide repeat domain 795 944 IPR011990 GO:0005515
Accr13g00878 946 MobiDBLite consensus disorder prediction 46 67 - -
Accr13g00878 946 MobiDBLite consensus disorder prediction 165 186 - -
Accr13g00878 946 PANTHER OS02G0132600 PROTEIN 161 942 - -
Accr13g00878 946 Gene3D Tetratricopeptide repeat domain 547 666 IPR011990 GO:0005515
Accr13g00878 946 Pfam PPR repeat 689 709 IPR002885 -
Accr13g00878 946 NCBIfam pentatricopeptide repeat 587 619 IPR002885 -
Accr13g00878 946 NCBIfam pentatricopeptide repeat 622 655 IPR002885 -
Accr13g00878 946 Pfam PPR repeat family 618 663 IPR002885 -
Accr13g00878 946 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00878 Accr-Chr13 10090297 10101161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00878 502 779 Glycosyltransferase AT1G05670 21.088 3.83e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00878 - - pcin:129313091 1496.1