Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00877 ATGCGTGCCTCCAACGCTAGAAATCTTTGTACACTGAGTGGTCTTCTCCGTTCTTCAACCGCGAAACTCAAGACTTCTAAGCCCCAATCCTATTCTCTAACTTCATCCATTTATGAAGATGGTTTTTCGGACCTTGATGGTGATTCTGACTCAACCCGCAACGCTCTCGAGTTTGAGCGTCCCTCTGATTCAGAGAAATTGCCTGACCTGGTATCTAAGCAGATTTCTTCTATGTTGTCTGATAACAAGAAAATTCCAAGAGGTCGAGTTCGAAAGCTTGCAAAATTTGAGTCTTCTACTCTAGGTTCATCCATTTTGAAAGAAGATTTTCCAGGACTTGTTGGCGAGCCTAAGCTTACAAGCTTCAAGGACCTTGACTACGCACCACTCTCTTGTTCAGAAAATTCACCTAATTTGGTATCTAAGAAGATTTCTTCTATGTTGTGCAAATCTGATGGAGCAGAGAAAAAAATTTCAAGAAGTCAAATTCGCTACTCTTCAAAAATGAGACCCTTTCCTAAAGCATTGTCTGTTTCGGAAGATGATTTTTCAGAACTTGACAGTGAACACAGTCCTTCTAGCCGTGAAGACCTTGACTTTGTTCAACCCTCTGTTTCAGAGAATTCACCTAATCTCTACACTGAGCAGATTAGTAATTTACTGTGTGATGATCAGCTGATCAATAGATCAGGAGATGATGTAGAAAAATTGGAAATTGCACTAGCTGTACCATGGAGACTTGACCCATTTGGTGGGAGTACATCACAGCCACAGAAAGAGAAGACTCGTGACAGAAAGAAAAAGTGGATTTTTAAACACAATCAGGAAAACCGCTTTGAAAGGGTAGTTAAATTCTGTGCTGATAAACTGGGTACAAAGGCTACTGTGGAAGTGTTAGGTAAATTGGGAAGAGAAACAGGCGTGAAAGAATACAATGCATTGATAGAAGTATGCATAAATAATGCCAGGAAAACCAATGATGAAGAAGTGGCAATTGAAGAAATGAGCAAGGCTTTTGGCCTTTTTAGAGTAATGAGAGAACAAGGTTATGAACTACAAGAGAAAACATACAGCCCTCTTCTTGTATATTTAATTGACATGGGTATGGTTGAAGAATTTCAATTATTCAGTGATGTAATCAAAGATGAGAATCCCAGTTCAGTTTCCAGATTGGGTTACTACGAAATGTTGTTATGGCTTAGAGTTGATGACAAAGAAAAGATTCAGGATCTTTGTAACTCTATTGCAGTCAATGATGGTATAGACTCTTCTGGTCTAGGAGAAAGTTATTTATTCGCATTTTGTGAAAGTGATTGGAAGGAGGGGCTTTTACAGTTGTTGGAAATTTTAGACATAACAAAGCTTTCATCTACAGAATCTGTAGCAAGTATTTTCAGATCATTGGGAAGGCTATGCCTGGACGCATATGCAGAAAAGTTCCTATCAGCTTTCAAAATTTGTGATAATGATGAAGCAAATAATGTTACAGACTTCATTGCCACTTATGTTGTTAGTCTACCAAATTTAGCGGTTGAGGATGTCATCTTGAAGTTCAAGGATTTGCACCAAAAACTGGAAGTTTCGCCTTCACCCTCATCATACGAGAAACTCATTATATATGCCTGTGACTTACTTGAGGTGCATTTTGCTCTTAAGACTGTTTGTGCAATGTGTGAAGCAGGCTTTACCTTATCTACTGAGGTGTTAAACTCCATATTACGAAGTGTTGAAGAAACATGTGAATATAATTTGGTCCACTGGATCTATTCCATAATATCTCACTACAGTTTGAAGGCAAATTGTGAAACATTTAGGTATATGATATGCTTGTGCACCAGGATGAAAGATTTTGAAAGTGCAGACAAGATGCTTGATGATTTGGAAGAAATGAATTTGAAGCCTACATCTAGCATGTACAATGCTATTATGGCTGGATATTTTAGAGAGAAAAATGTTAATGATGCTTTGAGGGTCCTTGAGCGCATGAAAGATACCAATATCAAGCCTGATTCAAGTACTTACAACCATTTGATTAGCAACTCTAAAACAGAGGAGGATATAACCAAGTATTATGAAGAAATGAAGCAGTCTAACTGCCAACCTACAAAACTTACTTTTGTGGCCCTTATAACTGCATATGCAGCCTGTGGACAGTTGGAGAAGGCAAAACAGGTGGTCTTAGATCCAGCCATTCCTGCAAAGAGCTTAAATGAAATCAAATGTGCTCTTCTCTCAACCCTTGCATCACATGGGCAATTGTCAGATTCTTTTCATATTTATGAGGAAATCAAGGAATCTGGAAACAATCTGGAGCCAAAAGCTGTTATAAGTCTTATTGAGGGACACATCAAATCTGATGAGGAGTTGGATAGATTGTTTCTGCTACTTAAAGAATTGGCTGATCCCGACTATTGGATAGATGGTTGCTTTAGAATTATTATGTTTTGTGTAGAGAACAAGCATTTAAGATCTGCTGTTGACTTGATCGAGCAACTCAATGATAAAATTCAGGATAACGAACTAGTAATGGAAGTTCTTTTGGATCAGGTGTTTTCTACAATTGCATCATCAGAGTCCACACATTTGAAGTTTGGCCTTGACCTTTATTGGCTGATCAGGGAAGTGCTTGGTATTGTGCCTTCACGGCAATGTCTGGATTTTCTTCTAACTGCTTGTGCCAATGCCAAAGATTTGGAGAACATTCGTAAAATTTGGAAAGAATACCAGCTTGCTGGATACCCTTTTAATGTCTTAAGTTACGTGAGGATGTATAGAGCTCTTTTGGTTGCAGGAGATTATGAATCTGCCCACCTTATGCTCAAGAAAATTCCAAGAGATGATCCCGATGTTCATTGCGTCGTCAAAAGAATGTCGAAAAACATACAATGA 2889 0.3846 MRASNARNLCTLSGLLRSSTAKLKTSKPQSYSLTSSIYEDGFSDLDGDSDSTRNALEFERPSDSEKLPDLVSKQISSMLSDNKKIPRGRVRKLAKFESSTLGSSILKEDFPGLVGEPKLTSFKDLDYAPLSCSENSPNLVSKKISSMLCKSDGAEKKISRSQIRYSSKMRPFPKALSVSEDDFSELDSEHSPSSREDLDFVQPSVSENSPNLYTEQISNLLCDDQLINRSGDDVEKLEIALAVPWRLDPFGGSTSQPQKEKTRDRKKKWIFKHNQENRFERVVKFCADKLGTKATVEVLGKLGRETGVKEYNALIEVCINNARKTNDEEVAIEEMSKAFGLFRVMREQGYELQEKTYSPLLVYLIDMGMVEEFQLFSDVIKDENPSSVSRLGYYEMLLWLRVDDKEKIQDLCNSIAVNDGIDSSGLGESYLFAFCESDWKEGLLQLLEILDITKLSSTESVASIFRSLGRLCLDAYAEKFLSAFKICDNDEANNVTDFIATYVVSLPNLAVEDVILKFKDLHQKLEVSPSPSSYEKLIIYACDLLEVHFALKTVCAMCEAGFTLSTEVLNSILRSVEETCEYNLVHWIYSIISHYSLKANCETFRYMICLCTRMKDFESADKMLDDLEEMNLKPTSSMYNAIMAGYFREKNVNDALRVLERMKDTNIKPDSSTYNHLISNSKTEEDITKYYEEMKQSNCQPTKLTFVALITAYAACGQLEKAKQVVLDPAIPAKSLNEIKCALLSTLASHGQLSDSFHIYEEIKESGNNLEPKAVISLIEGHIKSDEELDRLFLLLKELADPDYWIDGCFRIIMFCVENKHLRSAVDLIEQLNDKIQDNELVMEVLLDQVFSTIASSESTHLKFGLDLYWLIREVLGIVPSRQCLDFLLTACANAKDLENIRKIWKEYQLAGYPFNVLSYVRMYRALLVAGDYESAHLMLKKIPRDDPDVHCVVKRMSKNIQ 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00877 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 600 634 IPR002885 -
Accr13g00877 962 Coils Coil 829 849 - -
Accr13g00877 962 Gene3D Tetratricopeptide repeat domain 508 683 IPR011990 GO:0005515
Accr13g00877 962 Gene3D Tetratricopeptide repeat domain 811 960 IPR011990 GO:0005515
Accr13g00877 962 Gene3D Tetratricopeptide repeat domain 684 728 IPR011990 GO:0005515
Accr13g00877 962 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Accr13g00877 962 Pfam PPR repeat family 634 679 IPR002885 -
Accr13g00877 962 NCBIfam pentatricopeptide repeat 603 635 IPR002885 -
Accr13g00877 962 NCBIfam pentatricopeptide repeat 638 671 IPR002885 -
Accr13g00877 962 MobiDBLite consensus disorder prediction 46 63 - -
Accr13g00877 962 MobiDBLite consensus disorder prediction 181 202 - -
Accr13g00877 962 Gene3D Tetratricopeptide repeat domain 275 398 IPR011990 GO:0005515
Accr13g00877 962 PANTHER OS02G0132600 PROTEIN 171 958 - -
Accr13g00877 962 Pfam PPR repeat 705 725 IPR002885 -
Accr13g00877 962 MobiDBLite consensus disorder prediction 44 63 - -
Accr13g00877 962 MobiDBLite consensus disorder prediction 181 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00877 Accr-Chr13 10090297 10101161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00877 518 795 Glycosyltransferase AT1G05670 21.088 3.89e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00877 - - pcin:129313091 1531.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00877 13 10090297 10101161 Accr13g00877 13 10090297 10101161 ECH