Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00620 ATGGCGGGGAAGATTGGGTTTGAAGACTTGTTGCCTGTGATGGCTGATAAGCTTGGAGGAGAAGGTCTTATAAAGGAGCTTTGTAATGGGTTTGAGTTGCTGATGGACAAAGACAAAGGAGTTATCACTTTGGATAGCTTGAGAACAAACTCTGCTCTTCTGGGTCTTCAGGACTTGAAGGAAGACGAACTTGTGAGCATGATGCAGGAAGGAGATCTCGACGGCGACGGCGCTCTCTCTCAGATGGAATTCTGTGTTCTCATGTTTAGATTAAGCCCTGATTTGATGGCTCAATCTTCGCTTTGGCTCCAACACGAACTCGATCATCAACTCTCTCCCAAATGA 345 0.4609 MAGKIGFEDLLPVMADKLGGEGLIKELCNGFELLMDKDKGVITLDSLRTNSALLGLQDLKEDELVSMMQEGDLDGDGALSQMEFCVLMFRLSPDLMAQSSLWLQHELDHQLSPK 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00620 114 SUPERFAMILY EF-hand 3 97 IPR011992 -
Accr13g00620 114 SMART efh_1 63 91 IPR002048 GO:0005509
Accr13g00620 114 ProSitePatterns EF-hand calcium-binding domain. 72 84 IPR018247 -
Accr13g00620 114 Pfam EF-hand domain pair 39 90 IPR002048 GO:0005509
Accr13g00620 114 Gene3D - 5 113 - -
Accr13g00620 114 PANTHER CALCIUM-BINDING PROTEIN KIC 4 111 IPR044205 GO:0005509
Accr13g00620 114 ProSiteProfiles EF-hand calcium-binding domain profile. 59 94 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00620 Accr-Chr13 6696109 6696453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00620 7 111 EF-hand Containing Proteins AT5G54490 61.321 1.21e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00620 K24345 - gmx:100527206 185.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00620 13 6696109 6696453 Accr13g00620 13 6696109 6696453 ECH