Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00556 ATGGATTACGGATACAAGATGCGTGTGGCGTTTGCGATCGCTTCTTTGGCGGTTGTTTCAATCTACTTTACCGCTCGGTACCGGAGTCGGCGTAAACGGAAGTATCCACCGAGTTTGTGTTACTTACATACCGACCCAAAGCCACAGTATGCTTTTAAACGAGTATTAGCCGATAACTCGTACACTGTGTTCAAGCACTTGAAGCTCAACAACTCTGGTGGTGAGAGGCCTTCAAATTCCCATCCCTTTGAGGCAGAGATTACAGCACTACTTAAAGACCCTCAGCCTCAATTAGAATTCAGTACTGAGATTGAGGAACTGAAGAAGAAAGATACATATGTTTGGATTGATACAGAGTTTCCATTAAAGGAGCTTGTCAATGTATTAAATAAAGAGAGGTTCTTTGCTGTGGACACAGAACAACATACTTTGCGATCTTTTCTTGGCTTTACAGCATTAGTTCAGATTTCTACTCAGCAGGAGGATTATTTGATTGACACAATTGCCCTGCACGATTTAATGGGCATTCTTCGTCCGGTTTTTGCAAATCCTTTAATTTGTAAAGTGTTTCATGGAGCTGACAATGATGTCGTCTGGCTACAAAGAGATTTTCATATCTACGTTGTTAATCTATTCGATACGTCAAAGGCATGCGAGGTGCTGTCAAAGCCACAGAAATCACTCGCATATCTACTTGAAACTTATTGTGGAGTTACAACAAATAAATTGTATCAGCGTGAAGACTGGAGACAACGTCCCCTTTCAGCAGCAATGATACAATATGCACAAACAGACGCACACTATTTGTTACATATTGCAAATTGTTTGATCACTGAGCTGAAACAACTGGACGATGAAAACTCCGGTTCCAATGACAAATTCCATTTTCTTCGTGAGGCTAGTCGACGTTCCAACATGACTTGTTTGCAACTTTTCACAAAAGAGATTGAAGCTTTTCCTGGGGAATCTGCTGCATTATCATTATTTTCACGATATGTGGGTGGTGAGAGTTCTTCAGTTTCCAGTGAAACCCAGTTTCAGAATTTTGTGAGGCGACTATGTGCATGGAGAGATCTGATGGCTCGCGTCCATGATGAGAGCTTGAAATATGTATTATCGGACCAGTCAATTGTTGCTTTGGCAAATCGGCCTCCAACGAGTGAATCTAAAATAAGCAGTATCATAGCTCAGGCTGATATCAATATAGAAATGGGTGCCAATTCTTTCTTCTCTTCTCCATCTCCTATTGTCGTCAGCCACCTAAGCGATGTCTATGATTTGCTTACAGACAATTTAGGTAACACTGAAGATATTTATTCAGTAATTCTTCAGAAGTGCCTTGGTCCCAATGGGAGTTGTCCAATTTCTCTATTTAATTATTGTTTGTTGGTTAGCAGTAATCTGAGACCTATGATAGCCTATAAACACCATAGTGTAAAAAATTCGAAACAAGTTTCTCGGAAGGCATCTCGAGATTTGTTTGTTCAGAAATTCTCTTGTAAATCTCCTGTTTATCACAATTGTCGGATTTATGCTAATGATGGGCGGCTGCTTTGTTACTGTGATCGGAGGAAGCTTGAATGGTACCTCAATCGGGATCTGGCAAAACTAATTGATGAAGATCCACCTGCTATAATGCTTCTTTTTGAACCAAAAGGTCGCCCTGAGGATGAAGACAATGATTTCTATATCCAGAGCAAGAAAAACATATGTGTTGGCTGTGGTGAAGGAAAACACTACTTGCGGTACCGGATAATCCCATCGTGCTATAGAGTACATTTTCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTGCTTTGTGTGGACTGTCATGAAGTTGCTCATGCTGCTGCAGAGAAATACAAGAGAAAGATAGCAGCTGAATTTGGTATCCCTCTCTTTGTTCAGAGGGTAACTGATCCAGGACAAGCATCTGATGTAACCTTTGAAGAGGGAGGTGTTTCTCCCTTACAGTTGCGAACAGCAGCCATGGCTCTTCTGCGCCATGGACCAAGAATGCCTCCCAATCGCCGTGATGAACTGACTGAGATTGTGAAGAGGTACTATGGAGGAAGGGACATATCTGAGGAAGATTTGGAGAGAGCATTGCTAGTTGGCATGAGTCCACATGAGAGAAGGCGATTTGAGAAGAAAAGAGGATATTCATTTAAACATTTAATAAGAGGTGCTGCTGGGGAGACAGTACAGGAAAATAATGGTGATTGCACATCCACAATGGGAGTTGTGGACACATCAAATTTTAATGCTCTAGATGGTTCATCTGCAAATGAAGCGACAAGCAACGGAGTAGTTAGAGAACTTACTATGGTAAAGGATGATGTTGGAAACCCCGCTGTATCTTCTGATGCAGGAGTCAATGGAGCTGTCTCTGTTATTTTAACTCAACATGTGAACACAAAAAAAAATGCGGGTCCTAACGAGTTAAGTGCCTCTGGTATAAATCCTGATGATAGGTGTCTAGGAGGAGCGGCTCCAAATGGAATTGATGACTTATCCCCTAGAGATGAAGAGTCTGCACAAGCAAAACACAATCCGAAACTATCACTCTTGGGACATGGACCACATGGAAAGCAAGTTATTGAACATTTAATGAAGGAATACGGCGAGGATGGCATTGGCCAGTTTTGCCAGAGATGGAGACAAGTTTTTGTTAAAGCTGTCAAACCACGGTTTCTACCTGCTGGCTGGGACATAAATCACAGTGGCAGAAGGGATTTCGGAGAATTCAGTGTCTACAATCCGCTCCGACAGGCATCTGCTGCTAGCAAGTAA 2802 0.4193 MDYGYKMRVAFAIASLAVVSIYFTARYRSRRKRKYPPSLCYLHTDPKPQYAFKRVLADNSYTVFKHLKLNNSGGERPSNSHPFEAEITALLKDPQPQLEFSTEIEELKKKDTYVWIDTEFPLKELVNVLNKERFFAVDTEQHTLRSFLGFTALVQISTQQEDYLIDTIALHDLMGILRPVFANPLICKVFHGADNDVVWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCGVTTNKLYQREDWRQRPLSAAMIQYAQTDAHYLLHIANCLITELKQLDDENSGSNDKFHFLREASRRSNMTCLQLFTKEIEAFPGESAALSLFSRYVGGESSSVSSETQFQNFVRRLCAWRDLMARVHDESLKYVLSDQSIVALANRPPTSESKISSIIAQADINIEMGANSFFSSPSPIVVSHLSDVYDLLTDNLGNTEDIYSVILQKCLGPNGSCPISLFNYCLLVSSNLRPMIAYKHHSVKNSKQVSRKASRDLFVQKFSCKSPVYHNCRIYANDGRLLCYCDRRKLEWYLNRDLAKLIDEDPPAIMLLFEPKGRPEDEDNDFYIQSKKNICVGCGEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAAEFGIPLFVQRVTDPGQASDVTFEEGGVSPLQLRTAAMALLRHGPRMPPNRRDELTEIVKRYYGGRDISEEDLERALLVGMSPHERRRFEKKRGYSFKHLIRGAAGETVQENNGDCTSTMGVVDTSNFNALDGSSANEATSNGVVRELTMVKDDVGNPAVSSDAGVNGAVSVILTQHVNTKKNAGPNELSASGINPDDRCLGGAAPNGIDDLSPRDEESAQAKHNPKLSLLGHGPHGKQVIEHLMKEYGEDGIGQFCQRWRQVFVKAVKPRFLPAGWDINHSGRRDFGEFSVYNPLRQASAASK 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00556 933 SMART 35exoneu6 113 281 IPR002562 GO:0003676|GO:0006139|GO:0008408
Accr13g00556 933 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 46 318 - -
Accr13g00556 933 Gene3D - 46 318 IPR036397 GO:0003676
Accr13g00556 933 MobiDBLite consensus disorder prediction 811 863 - -
Accr13g00556 933 SUPERFAMILY HRDC-like 346 400 IPR010997 GO:0000166|GO:0044237
Accr13g00556 933 Gene3D HRDC domain 336 439 IPR044876 -
Accr13g00556 933 Pfam 3'-5' exonuclease 113 280 IPR002562 GO:0003676|GO:0006139|GO:0008408
Accr13g00556 933 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 43 924 IPR045092 GO:0000175|GO:0000467
Accr13g00556 933 SMART hrdc7 343 428 IPR002121 GO:0003676
Accr13g00556 933 Pfam HRDC domain 348 394 IPR002121 GO:0003676
Accr13g00556 933 ProSiteProfiles HRDC domain profile. 343 423 IPR002121 GO:0003676
Accr13g00556 933 SUPERFAMILY Ribonuclease H-like 47 307 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00556 Accr-Chr13 5954516 5961778 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00556 K12951 - gmx:100791485 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00556 13 5954516 5961778 Accr13g00556 13 5954516 5961778 ECH