Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00479 ATGATTATGGCGCCACGAATAGCTCGCGAGCGTCTACTGCTCGTTGAGTCCATGTACTCTGTCATTGCACTTCTCTTCCTCCTCGTTACTTGCGTTGAGCTCTGCGACGCGGCCTCTGTCGTCGACGTTTACCGTCTGATTCAGTATGATATGTCCGGGGCTCCATTTGGATCTCGACTCGCTAGCCTCAATCATCATGCCGGTTCTCTCCACTTCTCTCCCCATACTGATCTCTCACGCACTGTGCTCGTGATCCCGCTTCGCGAGTTGAACATAACTTTTGTCAAAGAATATATCGTTGAAAAGAAGCCACTGGGGGGCATATTATTTTTGCTGCCTAAGATGTTCAGTGTAGAAAATAAAGGTAGCATGAGAACTAATCATCAAGATGATGGCAAGGAGCGGCTGAAGAATGTGTTGGCTGAACTTGAACAGATACTAGTACACAATAACTTACCTTACCCTGTTTATTTTGCTTATGAGGATGACAATATTCATGATGTGTTAGCTGATATAAAGAAAAATGATGCTACTGGCCAACCTGCTACTGCAACTAATGGCGGATACAAGTTTGTTGTTTCAGCTCCAGAGCCAAAGAAAGTCGCATCCCCCACAATTACCAATATTCAGGGATGGTTGGCCGGAAAGAAGACGGATGATGATGCTAGTCAATTACCCACCATTGCTATAGTGGCATCATACGACACTTTTGGGGCTGCTCCTGCATTGTCGGTGGGAAGTGATAGTAATGGAAGTGGTGTTGTGGCTCTCCTTGAAGTAGCTAGATTGTTTTCTCTCCTCTATTCAAATCCAAAGACAAGAGGACATTACAATCTACTATTCGGACTGACATCTGGCGGGCCGTACAACTACAATGGAACTCGTAAGTGGCTTCGCAGCTTCGACCAACGAATGCGTGAAAGCATTGACTATGCTATCTGCTTGAATAGCATTGGCTCGTGGGAAAAAGATTTGTGGATTCATGTGTCTAAGCCTGCAGAAAATGTCTATATAAAGCAAATTTTCGAAGATTTTTCTAGCGTGGCAGAAGAGTTGGGTTTTACTGTCAATCTGAAGCACAAGAAAATAAATATTTCAAATCCTCGAGTAGCTTGGGAGCATGAACAGTTCTCTAGGCTGAGAGTTACTGCTGCCACCCTCTCTGAACTCTCCACCGCACCTGACTTGCTAGAGAGGACTGGGGGCCTTGTTGACAGCAGGCATTTCGTCAATGAAACAGCAGTTGTTAGAAGTGTGAAGTTAATTGCTGAGAGTCTTGCGAGGCATATTTACAGACATCAAGGAAAGAACATTCGTGTATTTGCAGACAACAGTAGTTTGGCTGTAAATCCTTCCTATATTCGATCATGGTTAAATGTTTTGTCCCAAACTCCTCGGGTGGCACCATTTCTGCCAAAAGATGATCCTTTTGTTGCAGCACTGAAAAAGGAATTAGAAGATCACACTGACCAGGTTGATCTGCAACGAGATGTGCTAGATGGGATGTTCACTTTCTATGATTCAACTAGGGCAATGCTAAACGTATATCAGGTCGCCAGTGTCACATTTGACCTTCTGTTGCTGTTAGTATTGGGGTCATATTTAATTTTGCTCTTCAGTTTCTTGGTCATCACAACTAGGGGCCTTGATGATCTAATCAGCTTATTTCGACGGCCTCCCTCACGAAAAGTGAAGACTGCATAG 1704 0.4419 MIMAPRIARERLLLVESMYSVIALLFLLVTCVELCDAASVVDVYRLIQYDMSGAPFGSRLASLNHHAGSLHFSPHTDLSRTVLVIPLRELNITFVKEYIVEKKPLGGILFLLPKMFSVENKGSMRTNHQDDGKERLKNVLAELEQILVHNNLPYPVYFAYEDDNIHDVLADIKKNDATGQPATATNGGYKFVVSAPEPKKVASPTITNIQGWLAGKKTDDDASQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGHYNLLFGLTSGGPYNYNGTRKWLRSFDQRMRESIDYAICLNSIGSWEKDLWIHVSKPAENVYIKQIFEDFSSVAEELGFTVNLKHKKINISNPRVAWEHEQFSRLRVTAATLSELSTAPDLLERTGGLVDSRHFVNETAVVRSVKLIAESLARHIYRHQGKNIRVFADNSSLAVNPSYIRSWLNVLSQTPRVAPFLPKDDPFVAALKKELEDHTDQVDLQRDVLDGMFTFYDSTRAMLNVYQVASVTFDLLLLLVLGSYLILLFSFLVITTRGLDDLISLFRRPPSRKVKTA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00479 567 SUPERFAMILY Zn-dependent exopeptidases 152 411 - -
Accr13g00479 567 PIRSF Nicalin 3 562 IPR016574 GO:0009966|GO:0016020
Accr13g00479 567 CDD M28_nicalin_like 140 431 - -
Accr13g00479 567 ProSitePatterns EF-hand calcium-binding domain. 248 260 IPR018247 -
Accr13g00479 567 Coils Coil 478 498 - -
Accr13g00479 567 Pfam Nicastrin 228 365 - -
Accr13g00479 567 PANTHER NICALIN 16 567 IPR016574 GO:0009966|GO:0016020
Accr13g00479 567 Gene3D Zn peptidases 124 430 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00479 9 565 EF-hand Containing Proteins AT3G44330 72.172 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00479 K26499 - qsa:O6P43_028556 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00479 13 4960911 4966974 Accr13g00479 13 4960911 4966974 ECH