Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00418 ATGCAGGCTCTCTCGTCTCACCCTTCCAATTCTCCCAGCTACCTCTTCCAGACCCGCCTTCCTGCACATCGGGCCGCTCCGACCCGATGCACCGTCAAATGCGGTTATGGCTTCGAATCCGCTGGATTTCATTCCGGCTTCGTCTCCTCCAAGGCTGATTGGCAGAGTTCCTGCGCCATCTTAGCTAGTAAGGTTGTTTCTCAGGAACAGTCCTCCACCGATTCCAACGGAGGCACAGCTGACCCCGTCGCCGCCATCAACGGCCATAAGGCTGCTGCGACGGATCTCAACCTCGTGCACATCGGTAACGTAGAAGGCAGCGACAGTAATAAGCAGCTTCAACCGAAGCCGCTCACTATTTCGGATCTCTCTCCTGCTCCGATGCATGGCTCGCAGCTCCGTGTGGCCTACCAGGGTGTTCCCGGAGCATACTCCGAAGCGGCTGCCGGCAAGGCCTATCCGAAATGTGAGGCCATTCCTTGTGACCAATTCGAGGTGGCTTTCCAAGCCGTACAGCTCTGGATCGCCGATCGAGCAGTTCTTCCGGTGGAAAACTCACTCGGCGGCTCAATCCACCGGAACTACGATCTCCTCCTTCGCCACCAGCTTCACATCGTCGGAGAGGTTCAACTTCCCGTGCACCACTGCCTTCTTGCGCTCCCGGGAGTTCGTAAGGAATATCTCAACCGCGTCATCTCGCATCCGCAAGCCCTCGCGCAGTGCGAGCACTCGCTAACCAAGCTCGGCCTCAACGTGGCACGCGAGGCCGTGGACGACACCGCCGGTGCGGCGGAATTTATCGCAACCAACAACCAACGCGACACGGCGGCAATCGCGAGTGCACGCGCGGCGGAGCTGTACGGATTGCAGGTCTTAGCAGACGGCATCCAGGACGACCCGAGTAACGTGACCCGATTCGTGATGCTGGCCAGGGAACCCATCATTCCGCGTACGGACAGGCCCTTCAAGACAAGCATAGTGTTCGCACACGATAAGGGAACGTCGGTACTGTTCAAGGTTCTATCGGCCTTTGCTTTCAGGAACATTAGCTTGACGAAGATTGAGTCAAGACCTTACCGGAGCCGGCCGATCAGGGTGGTGGACGATGCTGTGGGGACGGCGAAGCACTTCGAGTATATGTTCTACGTTGATTTCGAAGCTTCCATGGCGGAGGTTAGAGCTCAGAATGCCTTAGCAGAGGTTCAGGAATTTACTTCCTTCTTGAGGGTGTTGGGGAGTTATCCTATGGACATGACTCCATGGAGCCCCTCTTCTTCATCTTGTCCCATGGGAGATTAG 1299 0.5681 MQALSSHPSNSPSYLFQTRLPAHRAAPTRCTVKCGYGFESAGFHSGFVSSKADWQSSCAILASKVVSQEQSSTDSNGGTADPVAAINGHKAAATDLNLVHIGNVEGSDSNKQLQPKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPKCEAIPCDQFEVAFQAVQLWIADRAVLPVENSLGGSIHRNYDLLLRHQLHIVGEVQLPVHHCLLALPGVRKEYLNRVISHPQALAQCEHSLTKLGLNVAREAVDDTAGAAEFIATNNQRDTAAIASARAAELYGLQVLADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPYRSRPIRVVDDAVGTAKHFEYMFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWSPSSSSCPMGD 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00418 432 CDD PBP2_Ct-PDT_like 134 313 - -
Accr13g00418 432 SUPERFAMILY Periplasmic binding protein-like II 134 317 - -
Accr13g00418 432 Gene3D - 318 418 - -
Accr13g00418 432 Gene3D - 129 217 - -
Accr13g00418 432 ProSiteProfiles Prephenate dehydratase domain profile. 134 311 IPR001086 GO:0004664|GO:0009094
Accr13g00418 432 Pfam Prephenate dehydratase 135 313 IPR001086 GO:0004664|GO:0009094
Accr13g00418 432 FunFam Arogenate dehydratase 217 299 - -
Accr13g00418 432 FunFam Arogenate dehydratase 129 216 - -
Accr13g00418 432 CDD ACT_CM-PDT 323 415 - -
Accr13g00418 432 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 22 424 - -
Accr13g00418 432 SUPERFAMILY ACT-like 306 417 IPR045865 -
Accr13g00418 432 ProSitePatterns Prephenate dehydratase signature 2. 351 358 IPR018528 GO:0004664|GO:0009094
Accr13g00418 432 MobiDBLite consensus disorder prediction 106 125 - -
Accr13g00418 432 Gene3D - 218 299 - -
Accr13g00418 432 FunFam Arogenate dehydratase 318 418 - -
Accr13g00418 432 ProSitePatterns Prephenate dehydratase signature 1. 287 309 IPR018528 GO:0004664|GO:0009094
Accr13g00418 432 ProSiteProfiles ACT domain profile. 325 415 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00418 Accr-Chr13 4165156 4166454 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00418 K05359 - qsa:O6P43_028484 716.072