Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00390 ATGGCTCCTTTTCCGTCTGAGAACGGTGTTCAAGGAGACGATGGAAGAGAGGAGAACGACGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGCCGAGACTTAAGTACCAGAGAGTGGGAGGCAGCATTCCTTCGCTGCTAGCCAGTGACGCGGCGTCGTGTGTTGCAGTTGCCGAGCGGATGATTGCCATTGGCACTCATTCTGGCACCGTCCATATCCTTGATTTTCTTGGGAATCAGGTGAAAGAATTCGTTGCTCATGCTGCTGTTGTTAATGACCTTAGCTTTGACCTAGAGGGTGAATATATTGGAAGCTGTTCTGATGATGGATCGGTGGTCATAAACAGCCTATTTACTGGTGAGAAAATGAAAATTGATTATCATCGTCCAATGAAGGCTATTGCTCTGGACCCAAATTATGCGAGAAAAACATCAAGGAGATTTGTTGCTGGTGGCTTAGCTGGCCATTTATATCTTAATTCAAAGACATGGTTAGGCAATCGTGGTCAGGTTTTGCACGCTGGTGAGGGTCCAATACATGCTGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCAAATGATGCAGGAGTGAAGGTTTATGATGCAGCCAATGATCAGCGTGTAACATTTATTGAAAAACCCCGAGGGAGCCCACACCCTGAGCTTCTGCTCCCTCACTTGGCTTGGCAGGATGATACCTTCTTGGTGATAGCTTGGGGAAAATCTATCAAAATTGTATCAATAAGAACAAATCTCTATGAAGCAGTCAATGGGATGAACAGGTCAGCCCCAATATCTAGTAGGAACCAGGTGGATGTTGTGGCATCTTTTCAGACCACCTATTTAATCTCAGGAATTGCCCCGTTTGGTGATGCTTTGGTTGTTCTAGCTTATATTCCTGGAGAAGATGGAGAACAAGATTTTAGTGGCAATGCTCTTTCCCAGCAGGGCAATGCACAACGACCAGAAGTACACATGGTAACATGGAACAATGATGAACTTTCAACAGATGCTCTACCATTACATGGCTTTGAGCACTACAAGGCAAATGATTATTCCCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAATGGGCTGCAGGTGATGAACCTCTGTACTACATTATGTCCCCAAAAGATGTAGTCATTGCAAAGCCAAGGGATACTGAAGATCACATCGCATGGCTTCTTCAACATGGGTGGCATGAAAAAGCCTTGGCTGTTGTTGAATCTGGTCAAGGAAGGAGTGAACTTCTTGATGAGGTTGGATCCAGGTACCTCGATCATTTAATTGTGGAAAGAAAATATTCTGAAGCAGCTTCTTTGTGTCCCAAGTTGCTGCGAGGGTCTGCTTCAGCATGGGAAAGATGGGTATTCCACTTTGCACACCTTCGTCAACTTCCTGTATTGGTCCCCCATATGCCTACTGAAAATCCTAGACTGCGAGATACTGCGTATGAGGTCGCTCTTGTTGCGTTGGCTACAAATCCATCCTTTCACGGGGTTCTCTTGTCCATTGTCAAATCCTGGCCTTCTGGAATTTATAGTGCATTGCCTGTTATTTCAGCCATTGAACCTCAGCTCAATACTTCATCCATGACTGATGCACTCAAGGAGGCATTGGCTGAATTATATGTAATCAACGGGCAATATGAGGAAGCCTTTTCATTGTATGCTGATCTTATGAAACCAGAAATATTTGACTTCATTGATAAACATAATCTACATGAAGCAGTCCAAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTGCTCTATTCATTCAAAACAGAGACTTTATAAGTTCAACTGAAGTTGTGAAGCAACTTCTAAATGGTGATAATAAGAATGAGTGCAGATATTTTCTACATTTATACCTTCATTCATTATTTGCAGTCAACCCGCATGCTGGGAAGGAATTCCACGATATGCAGGTAGAACTTTACGCAGATTATGACCCAAAGATGCTAATACCATTTCTTCGCAGTAGTCAACACTATACCCTTGAGAAGGCCCATGAAATTTGCATCAAAAGAGGTCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGAATGGGAAACTCAAAACAAGCCCTATCTATTATTATTGACAAATTAGGGGATATAGAGGAGGCAGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTGATCAAGCAATGCCTACACAAACCTGAAATGGTGGGCATCCTATTGGAACACACTGTTGGGAATCTTGATCCCCTCTACATAGTAAACAAGGTTCCCAATTGGATGGAAATACCTCGACTTAGGGATCGGCTGGTTAAAATTATCACCGATTACAGGACCGAAATGTCACTCAGACATGGGTGCAATGATATCCTGAAGGCAGACTGTGTCAACCTTTTAATTAAGTATTACAAAGAGGCGAGGCATGGAGTTTATCTAAGTAATGAGGCCGAGCCACGGGCTAAAAGAAGTGAAAATCATTATTCTCAGGTGGTTGAAAAATCTACAGTTTTGAGAAACGTTGAAGTGAAGTCGAAGAACAGGGGAGGTGGAAGATGTTGTATATGTTTTGACCCTTTTTCTATTCAGAATGTATCAGACTCAGTCGTTATTTTCTTTTGCTGTCATGCCTATCACTCAACTTGTCTAATGGATTCAACTGACACCAGCAGTAGCAATAAAGATATTGAAGTCACCTATGGAAAGGCAGAACATAATGATTATAGTAGTTATGTGGATGAAGAAGAAGAATCCGAGACGGATGATCATCGTATGCGTTGTGTATTATGTACTACTGCTGCCAGTTGA 2838 0.4309 MAPFPSENGVQGDDGREENDEEEEEEEEEEEEPRLKYQRVGGSIPSLLASDAASCVAVAERMIAIGTHSGTVHILDFLGNQVKEFVAHAAVVNDLSFDLEGEYIGSCSDDGSVVINSLFTGEKMKIDYHRPMKAIALDPNYARKTSRRFVAGGLAGHLYLNSKTWLGNRGQVLHAGEGPIHAVKWRTSLVAWANDAGVKVYDAANDQRVTFIEKPRGSPHPELLLPHLAWQDDTFLVIAWGKSIKIVSIRTNLYEAVNGMNRSAPISSRNQVDVVASFQTTYLISGIAPFGDALVVLAYIPGEDGEQDFSGNALSQQGNAQRPEVHMVTWNNDELSTDALPLHGFEHYKANDYSLAHAPFSGSSYAGGQWAAGDEPLYYIMSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPHMPTENPRLRDTAYEVALVALATNPSFHGVLLSIVKSWPSGIYSALPVISAIEPQLNTSSMTDALKEALAELYVINGQYEEAFSLYADLMKPEIFDFIDKHNLHEAVQEKVVQLMMLDCKRAVALFIQNRDFISSTEVVKQLLNGDNKNECRYFLHLYLHSLFAVNPHAGKEFHDMQVELYADYDPKMLIPFLRSSQHYTLEKAHEICIKRGLLREQVFILGRMGNSKQALSIIIDKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNWMEIPRLRDRLVKIITDYRTEMSLRHGCNDILKADCVNLLIKYYKEARHGVYLSNEAEPRAKRSENHYSQVVEKSTVLRNVEVKSKNRGGGRCCICFDPFSIQNVSDSVVIFFCCHAYHSTCLMDSTDTSSSNKDIEVTYGKAEHNDYSSYVDEEEESETDDHRMRCVLCTTAAS 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00390 945 MobiDBLite consensus disorder prediction 1 37 - -
Accr13g00390 945 MobiDBLite consensus disorder prediction 14 31 - -
Accr13g00390 945 PIRSF Vps41 5 906 IPR016902 GO:0034058|GO:0046907
Accr13g00390 945 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 603 750 IPR000547 GO:0006886|GO:0016192
Accr13g00390 945 SUPERFAMILY RING/U-box 862 902 - -
Accr13g00390 945 FunFam Vacuolar protein sorting-associated protein 41 homolog 544 809 - -
Accr13g00390 945 Coils Coil 12 32 - -
Accr13g00390 945 SMART ring_2 863 940 IPR001841 -
Accr13g00390 945 Gene3D - 6 279 IPR015943 GO:0005515
Accr13g00390 945 CDD RING-H2_Vps8 861 896 - -
Accr13g00390 945 SMART WD40_4 78 117 IPR001680 GO:0005515
Accr13g00390 945 SMART WD40_4 166 202 IPR001680 GO:0005515
Accr13g00390 945 Gene3D Tetratricopeptide repeat domain 535 809 IPR011990 GO:0005515
Accr13g00390 945 FunFam Vacuolar protein sorting-associated protein 41 homolog 6 276 - -
Accr13g00390 945 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 52 255 IPR011047 -
Accr13g00390 945 PANTHER VACUOLAR PROTEIN SORTING VPS41 16 937 IPR045111 GO:0006623
Accr13g00390 945 SMART CLH_2 603 750 IPR000547 GO:0006886|GO:0016192
Accr13g00390 945 Pfam Region in Clathrin and VPS 605 746 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00390 Accr-Chr13 3902424 3909693 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00390 K20184 - gmx:100804711 1573.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00390 13 3902424 3909693 Accr13g00390 13 3902424 3909693 ECH