Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00262 ATGCATTCTTTTGGCAGAAATTGCTTGAAACATGGTAGCTGCTCCGTGAGAAACTTTTTGAATCATCTTTGCTTTGCAAACTCATTTGGGCAGAGATTTCATGAATCAGCTGTGCTCAATAGTCCCATTGTACAAAATTCTAAGAAGATTACTCTTTATGAAACTCATAAAATTGAACCCTTTTTCCAAATTTGTTCTAGAACAACTCCAGCCCCGCGTGCACCTTTTTCTGTTGCTTCGCATTATTCAACCAAGCCACCTTCAAGGTCATTTCGAAGAAGAGCCCGTAAGAGACTGTTAAAATCCTTGAAGCCTACTCTAGATGAAAACCAATTTCAATCCGCCTTGTCCCAACTATCCCCAAGGTTCACTGCTGAAGAACTCTGTAATGTTATTACTTTTCAAGAAGACCCATTAGTTTGCTTGGAGCTCTTTAATTGGGCATCACAACAACCCAGATTTCGGCACAATGCCGCCACTTACCACATAACCATCCAGAAGCTCGGTGCAGCAAAAATGTACCAAGAAATGGACGATATTGTCAATCAGGTGCTTGCAGTTCCCTTAGTTTGTTCAGAGTTACTTTACAATACTATGATATATTATTTCACAGAAGCTCGAAAGTTGACTCGAGCTGTCAATATATTTAACCACATGAAAAGTAGCAGAAATTTGAATTGCAAGCCTTCTATCAGAACCTATAATATCCTTTTTGCGGCACTGTTGAGCAGAGGAAGCAACTCTTATATAAATCATGCGTATATGGACACTATCAGATGCCTGTTTAAGCAAATGGTCAATGATGGGATACAGCCTGATATATTTTCTTTAAATTCCATGATTAAAGGTTATGTGCTTTCTCTCCATGTTAATGATGCGCTGAGGATATTCCATCAGATGCGTGCGGTTTATGCTTGCAAGCCTAACTCATTTACCTATGATTATTTGGTACATGGCCTGTGTGCGCAAGGAAGGACGAAGAATGCTAAAGAAATATGCGATGAAATGAAGAGTGAAAACTTAATCCCAAGTAGTAAATCTTATAATTCACTTGTCAATGCTTTGGCACTTGGTGGAGAGATTGAGGAAGCAGTAAAATATCTGTGGGAGATGACAGAAAATCAGAGGTCGGCTGATTTTATTACATATAGGACCGTACTGGATGAGATATGTAGACAAGGAAGAGTTCAGGAGGCAATGAGGTTATTGCAGCAGTTTCAAGAGAAGGACCTTGTGGATGGGCATGCTTACCGAAAGCTTCTTTGTGTGCTGGAAGATGACTATGGGAATTCTGTTAGCAGAGTTGATCCAGGAGTATTCCACGACAAGACTTTTGCTCATGGCAAGGTCCGATAA 1356 0.4004 MHSFGRNCLKHGSCSVRNFLNHLCFANSFGQRFHESAVLNSPIVQNSKKITLYETHKIEPFFQICSRTTPAPRAPFSVASHYSTKPPSRSFRRRARKRLLKSLKPTLDENQFQSALSQLSPRFTAEELCNVITFQEDPLVCLELFNWASQQPRFRHNAATYHITIQKLGAAKMYQEMDDIVNQVLAVPLVCSELLYNTMIYYFTEARKLTRAVNIFNHMKSSRNLNCKPSIRTYNILFAALLSRGSNSYINHAYMDTIRCLFKQMVNDGIQPDIFSLNSMIKGYVLSLHVNDALRIFHQMRAVYACKPNSFTYDYLVHGLCAQGRTKNAKEICDEMKSENLIPSSKSYNSLVNALALGGEIEEAVKYLWEMTENQRSADFITYRTVLDEICRQGRVQEAMRLLQQFQEKDLVDGHAYRKLLCVLEDDYGNSVSRVDPGVFHDKTFAHGKVR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00262 451 Pfam PPR repeat 347 374 IPR002885 -
Accr13g00262 451 Pfam PPR repeat 381 410 IPR002885 -
Accr13g00262 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Accr13g00262 451 Gene3D Tetratricopeptide repeat domain 248 434 IPR011990 GO:0005515
Accr13g00262 451 Pfam PPR repeat family 195 241 IPR002885 -
Accr13g00262 451 Pfam PPR repeat family 272 321 IPR002885 -
Accr13g00262 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Accr13g00262 451 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Accr13g00262 451 NCBIfam pentatricopeptide repeat 196 222 IPR002885 -
Accr13g00262 451 NCBIfam pentatricopeptide repeat 276 308 IPR002885 -
Accr13g00262 451 NCBIfam pentatricopeptide repeat 381 411 IPR002885 -
Accr13g00262 451 PANTHER ATPASE EXPRESSION PROTEIN 3 99 422 - -
Accr13g00262 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Accr13g00262 451 Gene3D Tetratricopeptide repeat domain 92 247 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00262 Accr-Chr13 2563782 2565708 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00262 150 411 Glycosyltransferase AT1G05670 29.008 1.85e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00262 - - gmx:102666460 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00262 13 2563782 2565708 Accr13g00262 13 2563782 2565708 ECH