Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00248 ATGGCGGCCTCGATGGCTGCATCACGATTATCCCATTTCTCCTATCATGCTAGACACCAATCTTCGCCGTCCGAAATCCCGCCGCTAACCACCTTCAAACCGTATGATTCTCATGCGAAACGCTACCGGAGCCTTTCCATTCGCGCTTTACTTCAGGGAGAGAACGAACTCAGCAAGAACCCCCAAGCTCTAGATTTACCAAGTGTCAATGACTTCCCAAGCGACGTCATCTCCAAAGACATGCTCGCCCTTCCGCGGCCATTGTCTTCTGCTCAGTTCTCTGGTTCAGTTTCTGATGGATCTCGCCTTCGTGTGGCATACCAGGGAGTTCGAGGCGCTTACAGTGAGTCAGCCGCACAGAAGGCCTACCCAAATTGTGAGGCAGTGCCTTGTGACGAATTTGACACCGCATTTGAAGCTGTTGAAAGGTGGATTGTGGACAGAGCAGTTTTACCGATTGAGAATTCTTTAGGAGGGAGCATTCATAGAAATTATGACCTATTACTTCGACACAGGTTGCATATAGTGGGTGAAGTAAAATATGCAGTCCGCCATTGTCTGTTGGCCAATCATGGTGTTAAACTTGAGAATTTGAAGCGTGTACTTAGTCATCCACAGGCTCTCGCTCAGTGTGAGGACACATTGACCAGTTTGGGATTGGTCAGAGAAGAAGTAGATGACACAGCTGGTGCAGCAAAGCATGTTGCGGTTCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGTTGCTGCTGAGATCTATGACTTGAATATACTTGCTCAAGATATTCAGGATGATAGTGATAATATCACTCGATTTTTAATGTTAGCACGAGAACCTATTATTCCAGGCACAGATAGGCTATTTAAGACAAGCATAGTTTTTTCTTTAGAGGAGGGTCCTGGGATACTTTTCAAGGCGCTTGCCGTTTTTGCTCTGCGACAAATCAACCTCACTAAGATAGAAAGTCGGCCATTGAGGAACCAACCTTTACGAGCATCATCCGACGATAGCACCAATATGTACTTTGATTATCTTTTCTATGTGGATTTTGAAGCATCAATGGCTGATCAGAATGCACAAAATGCCCTAAGGCATCTAAAGGAGTTTGCTACGTTCCTGCGAGTGCTCGGGAGTTATCCGGTGGACACAAGTATAGCATAG 1167 0.4602 MAASMAASRLSHFSYHARHQSSPSEIPPLTTFKPYDSHAKRYRSLSIRALLQGENELSKNPQALDLPSVNDFPSDVISKDMLALPRPLSSAQFSGSVSDGSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCDEFDTAFEAVERWIVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKYAVRHCLLANHGVKLENLKRVLSHPQALAQCEDTLTSLGLVREEVDDTAGAAKHVAVHKLQDAGAVASSVAAEIYDLNILAQDIQDDSDNITRFLMLAREPIIPGTDRLFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRASSDDSTNMYFDYLFYVDFEASMADQNAQNALRHLKEFATFLRVLGSYPVDTSIA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00248 388 Gene3D - 188 267 - -
Accr13g00248 388 SUPERFAMILY ACT-like 274 383 IPR045865 -
Accr13g00248 388 ProSiteProfiles ACT domain profile. 293 382 IPR002912 -
Accr13g00248 388 Gene3D - 99 187 - -
Accr13g00248 388 Gene3D - 287 385 - -
Accr13g00248 388 FunFam Arogenate dehydratase 99 186 - -
Accr13g00248 388 ProSitePatterns Prephenate dehydratase signature 2. 319 326 IPR018528 GO:0004664|GO:0009094
Accr13g00248 388 ProSitePatterns Prephenate dehydratase signature 1. 255 277 IPR018528 GO:0004664|GO:0009094
Accr13g00248 388 CDD PBP2_Ct-PDT_like 104 281 - -
Accr13g00248 388 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 49 386 - -
Accr13g00248 388 FunFam Arogenate dehydratase 187 267 - -
Accr13g00248 388 Pfam Prephenate dehydratase 105 281 IPR001086 GO:0004664|GO:0009094
Accr13g00248 388 FunFam Arogenate dehydratase 286 385 - -
Accr13g00248 388 SUPERFAMILY Periplasmic binding protein-like II 104 285 - -
Accr13g00248 388 CDD ACT_CM-PDT 291 382 - -
Accr13g00248 388 ProSiteProfiles Prephenate dehydratase domain profile. 104 279 IPR001086 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00248 Accr-Chr13 2372170 2375446 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00248 K05359 - qsa:O6P43_023589 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00248 13 2372170 2375446 Accr13g00248 13 2372170 2375446 ECH