Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00234 ATGAGTGACGAAGGAGAAAGGACTTGCCCTCTTTGTGCAGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGCTGGCATCACATAATGGACATGGCCGAGAAGGATGACACAGAGGGGAGATGCCCTGCGTGTCGAACTCCATATGACAAGGAGAAGATTGTAGGGATGGCTGCAAACTGTGAGAGATTGGTGGCAGAAATTAATACTGAAAAGAAGATGAAGACTCAGAAAGCAAAGTCTAAGTCTTCTGAAGGCCGGAAGCAGCTGAGCAGTGTGCGAGTGATTCAGCGGAATCTTGTCTATATCGTTGGATTGCCGCTTAATCTGGCAGATGAAGAAATTCTTCAGCATCGAGAGTATTTTGGTCAGTATGGGAAAGTCTTAAAAGTGTCAATGTCTCGGACAGCAGCTGGAGTCATTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGAAGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTCTTGGACGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAGTATTGCCATGCATGGCTCCGGAACATGCCCTGCAGCAATCCTGATTGTTTATATCTGCATGAGATTGGCTGTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAGTTCAACAAATTACTGGTGCCACAAATAATATGCAACGGCGGTCAGGGAATTTGTTGCCACCCCCTGTTGATGATTACATAAACCAATATGATGGAAAACCCATTGTGAAAAATGCCACAAATAATCCCCCTAGCACTGTGAGAGGTTCACCTCCAAATGGAAGTTCTGGAAGATCTATAACTCTAAATCCTGCTGCCGCATGGGGAACAAGAGCTACAAATTGTCAGCCCCCTGCTGGAGGTTTATTAAATGGACCGCCTAAGCCAAAAGCTGATGCTGTTAGTGGCACACTGGCCTTCTCTTCAGCTGTTGCAGGTTCAAGCCAGAACTCTTCATTGCACTGTGATGCAGCCAAGAGGCCACCATCAAGTGATGGAAGTCATAATAACCTTGGAGTACAAAATGATTCATTAAAATCTGTAAAGCAATTCAATAGCATGGAAAATCCAAGTAATGCAGGTGAAAAGACTGCTACATCTGATGGTTCACTTGCACCTGTGAATTCAAACAGCTTGTTGTCTTCTTTACCACTATCTCGAGATGGTGATAGAGGTAGTTGTACTACATCAAGCACAGCAGATTCTACTGACATCACCGGGCAGTCATGCAGCTCTGGTCCTGAGGAAGCTACTATTGCTACCAATGAGGAGATTCAGAACCTGTGCTCCAATCTGTCCTCTGTTAACATTGATAGAAATGGCCAAAATGAACAATATGGCATGGTCAGATCTAATAGCCCCTCTTCTGATTATGTCTTGACAAAGTCTCCTCAACTTCAAGCATCACAACAGCATAAAGATGACAAATTTAGAGATGTGCAATTTTCCAGCGACTCTGGTAAGGCTGCTCCATCTGATTGGGAGCAGTCTGATTGGAAATTAAATTCACAAGCCCATATAGTATCAGCTACAACTGACTTGGAAGATGATATAGCTTCTTTTGATAATCAAAGGCTCAAAGATCCAGAAGTTGTTTGTCATTCTCCTTACATGCCTAAGTCAACAAGTTTTGTTCATGTCCCAATCCATTCTAATCACAGTCTCATCCAACATGGGGAACAACCCCCTGCTATGCATGTTGATTTTGCATCTGCAGATTCTAAGGTTGGGGATGATTCTCTGTTACATTCATCCTCCGCATTATGTAATGGTTATCCTGATAAATTGGTCAGCAGCTGCTCTCCTGGTTTGAATGGCACCAGTGATTGTACCTCGCTTCAGGATGTAAGAAATGAACAATGCATAGGAAGATTATTCACTGAATCAGTTGGTGCTGGGAGTGACGCTGCATTGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACCTTGATGCATGGGATGATTCACTAACGTCACCGCAGACTTTGGTTAAGTTGCTTGGTGATAGCACTGATAACCAGTATGTTCCTTTGAAGAAATCCAGTTCTTTGAAAGTGCAGAATAATAGTCAGTCAAGATTCTCTTTTGCTAGACAGGATGAACCTAAAATCCAAGCATTTAATGCAAACCCATCTTATGGTATTAGTGATCAATTTCCAAGGAGGGGCTCTTTCATACATGATTTTTCTGAAAGGGACTTATATAATGATAGGAAGTTGGGTATGGCGAATGGCTTTTCTTCCTCTAAACTTGAGGAATCAGAAAATCTGAGCAGTGGTCACTTTGTTGCTTCTAATAAGCATTCTGCTGTTTCTAGAGCTCAAATTTCTGCTCCTCCAGGATTTTCAGTTCCAAGTAGGCCTCCACCACCAGGTTTCTCTTCTTACGAGAGAGTGGAACAGGCTTTCGGTTCAGTGTCTGGGAATTCATTGCTTGACCCATCCTTGTTAAGAAATTCATATCAGACACCCACAGCTGGAAATATTGGTGGTACAGGGGACATTGAATTAGTAGATCCTGCTATTTTGGCTGTTGGCACTGGCAGACTTCAAGGTCCATTAAACAGCCCAGGGTTGGACATCAGATCTAGTTTCTCCCCACAATTAAATTACTTTGAAAATGAGGCCAGACTTCAATTGTTGATGCAAAGATCTCTCTCACAACCACAGAACAGATTTTCTGAAATAGGGAGTACATTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTGGATCAATCACAAGTAGGCAATTTGACCCCTTTTGCTCAGTTGTCCTTGCAGCAGTCTAGAAATGCTCTTTTGTCTAATGGTCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAGTAGTCTTGGGGTGGCTGAGCTACTAAGAAATGAAAGACTTGGAATTAACAAGTTATATGCAGGATATGAGGATTCAAAATATCGGATGCCAAACTCTGGGGATATTTACAACCGAACTTATGGGATGTGA 3087 0.4198 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTEKKMKTQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEEILQHREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLDGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGCQEDSFTKDEIISAYTRVQQITGATNNMQRRSGNLLPPPVDDYINQYDGKPIVKNATNNPPSTVRGSPPNGSSGRSITLNPAAAWGTRATNCQPPAGGLLNGPPKPKADAVSGTLAFSSAVAGSSQNSSLHCDAAKRPPSSDGSHNNLGVQNDSLKSVKQFNSMENPSNAGEKTATSDGSLAPVNSNSLLSSLPLSRDGDRGSCTTSSTADSTDITGQSCSSGPEEATIATNEEIQNLCSNLSSVNIDRNGQNEQYGMVRSNSPSSDYVLTKSPQLQASQQHKDDKFRDVQFSSDSGKAAPSDWEQSDWKLNSQAHIVSATTDLEDDIASFDNQRLKDPEVVCHSPYMPKSTSFVHVPIHSNHSLIQHGEQPPAMHVDFASADSKVGDDSLLHSSSALCNGYPDKLVSSCSPGLNGTSDCTSLQDVRNEQCIGRLFTESVGAGSDAALDKGESSIISNILSMDLDAWDDSLTSPQTLVKLLGDSTDNQYVPLKKSSSLKVQNNSQSRFSFARQDEPKIQAFNANPSYGISDQFPRRGSFIHDFSERDLYNDRKLGMANGFSSSKLEESENLSSGHFVASNKHSAVSRAQISAPPGFSVPSRPPPPGFSSYERVEQAFGSVSGNSLLDPSLLRNSYQTPTAGNIGGTGDIELVDPAILAVGTGRLQGPLNSPGLDIRSSFSPQLNYFENEARLQLLMQRSLSQPQNRFSEIGSTFSQIGDSYGISSRLDQSQVGNLTPFAQLSLQQSRNALLSNGQWDGWNEVQSGSSLGVAELLRNERLGINKLYAGYEDSKYRMPNSGDIYNRTYGM 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00234 1028 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 111 192 - -
Accr13g00234 1028 SMART rrm1_1 111 192 IPR000504 GO:0003723
Accr13g00234 1028 Gene3D - 111 192 IPR012677 -
Accr13g00234 1028 CDD RRM_CNOT4 105 204 IPR034261 -
Accr13g00234 1028 MobiDBLite consensus disorder prediction 475 526 - -
Accr13g00234 1028 MobiDBLite consensus disorder prediction 270 331 - -
Accr13g00234 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Accr13g00234 1028 SMART rrm2_1 111 192 IPR003954 GO:0003676
Accr13g00234 1028 MobiDBLite consensus disorder prediction 475 498 - -
Accr13g00234 1028 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 1 77 - -
Accr13g00234 1028 SUPERFAMILY RING/U-box 3 66 - -
Accr13g00234 1028 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1022 IPR039780 GO:0004842|GO:0030014
Accr13g00234 1028 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Accr13g00234 1028 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Accr13g00234 1028 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Accr13g00234 1028 MobiDBLite consensus disorder prediction 808 830 - -
Accr13g00234 1028 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Accr13g00234 1028 CDD mRING-HC-C4C4_CNOT4 8 58 IPR039515 -
Accr13g00234 1028 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Accr13g00234 1028 MobiDBLite consensus disorder prediction 271 307 - -
Accr13g00234 1028 MobiDBLite consensus disorder prediction 348 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00234 Accr-Chr13 2318021 2324000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00234 K10643 - gmx:100801880 1369.76