Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00224 ATGTATAGAGCACGAGCTGAAGGCCTAACCTTCACGAAGGAACCATATATTGAGGATGTTGGACCACGCAGAATCAAGAGCATGCAATTCACTGCGTTATCAGACTCAGAGATCAGTAGAATTGCTGAGGTTCAAGTTGCAAAAGGTTCATACTATGATGAGAGAAGAAAGCCAATTGAGTATGGCTTGTTGGATCCCCACATGGGTCCTGCTAATAAGAGTTGCACGTGTGCAACATGCCATGGGAGTTTTGTTGACTGTCCAGGGCACTACGGATACTTAAACCTTGCTCTTCCAGTTTTCAATGTTGGGTATAAAGAAAAAATTTTGCAAATATTGAAGTGCATTTGTAAGGGCTGTGCTCGTATACTTCTCGATGAAAATTCTTGTAAAGAACGCTTGAAGAAGATGAGAAGCCCCAAAATAGAGCCTTTGAGGAAGATTGCAATAGCTAAAAGTCTTATTGATAAATGTAGTGCCATGACAAGTAGCAAAACAGTGAAGTGTCTAAGATGTGGATTTATCAATGGTCCAGTGAAGAAGCTTGTGTCTAACTTAGGCATTATTCATGATACTTCAAAATGTATTGATGGCATTGAGAAAGATTTTAAGTCAGCAGTTTCTACAAGAGAGTCTGCTTCCACCAACTCGACTACTTATGTTCTAAACCCTCACAGAGTTCTTTCCCTCTTCAAAAGGATGCTTGATGAGGACTGTGAATTACTTGATCTTGCAGACAGACCCGAGAAATTCATTATAATGAACCTGGCTGTACCACCCATAGCTATTCGACCTTCAGTTATAATGGATGGTTCCCAGAGCAATGAAAATGATGCAACAGAGAGGCTAAGGCAAATAATTCAAGCAAATGCTAACCTTCGCCATGAGTTGCAGGAAGCTAGTGGGGCATTCAAATGTCTGGATGGCTGGGAAATACTTCAAGTTGAGGCTGCTCAATTCATAAATAGTGATGTGCGTGGCATTCCCTTTAATATGCAACGCGCCAAGCCATTGGCTGGCTTTGTTCAACGCCTTAAAGGAAAGCAGGGGCGTTTTCGTGGCAACTTGTCAGGGAAACGTGTTGAGTTTACTGGCAGGACAGTCATTTCACCGGATCCTAATCTGAAAATTTCTGAGGTCGCAATACCAATCCATATGGCTCGTATATTGACCTTTCCTGAGTGTGTTTCCCCTCACAACATTGAGAAATTGAGACAGTGTGTGAGAAATGGCCCTGATAAGTATCCTGGTGCAAGGTTGCTTAGACATGCTGGTGGCACGTCAAGGTCCCTAAAAGTTTCGTTTCGGAAGCGCCTTGCTGATGAATTGAGGTATGGTGATATTGTTGATCGTCATTTGGAAGATGGAGACATAGTTCTTTTCAATAGACAACCAAGCTTGCATCGGATGTCTATCATGTGTCACAGGGCTAGAATTATGCCTTGGAGAACTTTGAGATTCAATGAATCGGTCTGCAACCCATATAATGCTGACTTTGATGGTGATGAGATGAATTTACATGTCCCGCAAACTGAGGAGGCACGGACAGAGGCTGTTTTATTGATGGGGGTGCCACACAATTTATGCACACCAAAGAATGGAGAAATTCTGGTTGCCTCTACTCAAGACTTTTTAACCTCCTCATTTTTGATAACTAGAAAAGATACGTTTTATGATCGTTCTGCTTGTGCACTTATTTGCTCGTACATGGGTGATGCCATGGATATTGTTGATCTGCCAACTCCAGCAATTATAAAGCCAGTAGAGCTTTGGAGTGGGAAACAGATATTTAGTGTTCTAATACGCTCTCATGCAAATGTGAGGACCTATGTGAGTCTTACTGTTAAGGAGAAGACCTACAGCACAAAGCTTGATGACAGAAAAAGAGAGTTAAAAACAATCTGTCCTAATGATGGGTTTGTTTATTTTCGTAACAGTGAGTTGATATCTGGGCAACTTGGAAAGGTTACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCGGTGCTACTTAGAGACTATAAAGCCCATGCTGCAGCCTCTTGCATGAACCGTCTAGCTAAGTTGAGTGCTCGATGGATAGGCAATCGTGGGTTCTCCATAGGCATTGATGATGTCCAACCAAAAGAGGAATTGATCAGAAAGAAAGATGAAACAATTTCTGATAACTACAGAAAATGTGATAATTTTATTGAGGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATGCTGCTCAAACATTGGAGGCTCTAATAACTAGTGTATTGAATGGCGTTCGAGATACTGCAGGGAAGGTTTGCATGCAAACACTGCATTGGAGAAATAGTCCCTTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATAAATATCAGCCAAATGGTTGCGTGTGTTGGTCAACAATCAGTTGGGGGTCGTCGAGCCCCCAATGGGTTCATGGAACGGAGTCTTCCTCATTTCCCAAGAAAAGCGAAGACCCCTGCAGCAAAAGGTTTTGTAGCAAATTCCTTTTATAGTGGATTATCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACTGCGGTGAAAACTGCTGACACTGGTTATATGTCTCGTAGATTAATAAAAGCTTTGGAGGACTTGTTTGTCCACTATGATAACACTGTAAGAAACGCTAGTAGTTGTGTAGTCCAATTTTGCTATGGAGATGATGCCATGGATCCAGCTGGCATGGAAGGAAAAGATGGAAAACCTTTGAATTTTGAGCGGTTGTTTTTGAAAAGCAAGGCTATATGTCCCAATGATGGACATGATGAAATCCTATCCTCCTCTGATGTGTGTAAAGTAGTGCAAGACAAACTGTCAAAATTTGGTATGTTGAAAGAGAAAGGAGCTTCAGAAGATGATATAAGTTCTGAGGTGGGTTGCTCTGCCGACTTCATCAATTGCCTACAATCCTTCATCAGAGATAACATCGGAGTCTTATCAGAAAGAGATGAAACTTCTGTTGGTGATGACAGTAGAAATCAGAAAAAATTTATTCAGAGGATATCTGGTATTACTAGTAGACAGCTAGAGGTTTTCTTGGATATATGTCTTTCTCGATATCGTTCAAAAAGAATTGAGGCTGGAACTCCAATTGGTGCCATTGGTGCTCAAAGTATTGGAGAGCCTGGGACACAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTTGGAGTTCCACGTATCAAAGAAATAATAAATGGCGCCAAAAGAATCAGTACACCTATCATTACTGCAATACTTGAGAGTGATGATAATGCTAATACTGCGAGGATGGTAAAAGGTCGCATTGAGAAAACAAACTTGGGCCAGATAGCAAAGAGCATAAAAATTGTGATGACATCAAGATCCGCATCGATTGTTATCACACTGGACATGGAAATAATCCGAGGTGCACAATTGAATATAGATGCTAATATTGTAAGGGAATCCATTTTGCATGCTCCAAAATTAAAATTGAAGCCAGAGCACATTAACGTTTTGGATGTCGAAAAGCTTGCAATTGTACCCCAAGATGCAGATAGAAGTAAAATCAATTTTCAACTTAACTATCTAAAAAATTTGCTTCCATCAGTTGTAGTAAAGGGAATTAAGACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGTGACAAAGATGGAGAAGTTCAAGTTGTTGGTAGAAGGCACGGGCCTTCAAGAGGTTATGGGCATTGAGGGGGTTAATGGACGTAAAACTCTTAGTAATCATATCATTGAAGTAGAGCAGACTCTAGGAATTGAAGCGGCTAGAAAGTGTATCATTGAGGAGATAAAGTTTACAATGGGAAGCCATGGAATGAGTATAGACATACGCCATATGATGCTTTTGGCTGATGTGATGACCTTCAGGGGTGAAGTCCTTGGAATAACAAGATTTGGAATTCAAAAGATGGATAAGAGTGTATTAATGCTAGCATCATTCGAGAAGACTGCAGATCACCTTTTCAATGCTTCTGTGCATGGGAGGGATGACCAGATTGAAGGAGTGACTGAATGCATAATCATGGGCACACCAATTCAGATAGGCACTGGAATGATCAAAGTTAAACAAAGATTGGATCCTCCAGCGCTGTGTCAGGGTGCCGATCCTATTCTGTCGAGTTCATAG 4212 0.4107 MYRARAEGLTFTKEPYIEDVGPRRIKSMQFTALSDSEISRIAEVQVAKGSYYDERRKPIEYGLLDPHMGPANKSCTCATCHGSFVDCPGHYGYLNLALPVFNVGYKEKILQILKCICKGCARILLDENSCKERLKKMRSPKIEPLRKIAIAKSLIDKCSAMTSSKTVKCLRCGFINGPVKKLVSNLGIIHDTSKCIDGIEKDFKSAVSTRESASTNSTTYVLNPHRVLSLFKRMLDEDCELLDLADRPEKFIIMNLAVPPIAIRPSVIMDGSQSNENDATERLRQIIQANANLRHELQEASGAFKCLDGWEILQVEAAQFINSDVRGIPFNMQRAKPLAGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKISEVAIPIHMARILTFPECVSPHNIEKLRQCVRNGPDKYPGARLLRHAGGTSRSLKVSFRKRLADELRYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAVLLMGVPHNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSACALICSYMGDAMDIVDLPTPAIIKPVELWSGKQIFSVLIRSHANVRTYVSLTVKEKTYSTKLDDRKRELKTICPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNRGFSIGIDDVQPKEELIRKKDETISDNYRKCDNFIEAFNKGKLELKAGCDAAQTLEALITSVLNGVRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFMERSLPHFPRKAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTVRNASSCVVQFCYGDDAMDPAGMEGKDGKPLNFERLFLKSKAICPNDGHDEILSSSDVCKVVQDKLSKFGMLKEKGASEDDISSEVGCSADFINCLQSFIRDNIGVLSERDETSVGDDSRNQKKFIQRISGITSRQLEVFLDICLSRYRSKRIEAGTPIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITAILESDDNANTARMVKGRIEKTNLGQIAKSIKIVMTSRSASIVITLDMEIIRGAQLNIDANIVRESILHAPKLKLKPEHINVLDVEKLAIVPQDADRSKINFQLNYLKNLLPSVVVKGIKTAERVVISKEEDKVTKMEKFKLLVEGTGLQEVMGIEGVNGRKTLSNHIIEVEQTLGIEAARKCIIEEIKFTMGSHGMSIDIRHMMLLADVMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVHGRDDQIEGVTECIIMGTPIQIGTGMIKVKQRLDPPALCQGADPILSSS 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00224 1403 Gene3D RNA polymerase II, clamp domain 15 138 IPR044893 -
Accr13g00224 1403 FunFam DNA-directed RNA polymerase subunit 16 138 - -
Accr13g00224 1403 Pfam RNA polymerase Rpb1, domain 3 527 706 IPR007066 GO:0003677|GO:0003899|GO:0006351
Accr13g00224 1403 PANTHER DNA-DIRECTED RNA POLYMERASE 29 1385 IPR045867 GO:0003899|GO:0006351
Accr13g00224 1403 Gene3D - 824 882 - -
Accr13g00224 1403 FunFam DNA-directed RNA polymerase II subunit RPB1 433 531 - -
Accr13g00224 1403 Pfam RNA polymerase Rpb1, domain 4 732 837 IPR007083 GO:0003677|GO:0003899|GO:0006351
Accr13g00224 1403 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 17 1386 - -
Accr13g00224 1403 FunFam DNA-directed RNA polymerase subunit 1336 1381 - -
Accr13g00224 1403 FunFam DNA-directed RNA polymerase subunit 706 823 - -
Accr13g00224 1403 Gene3D - 883 934 - -
Accr13g00224 1403 Gene3D RNA polymerase ii 391 451 - -
Accr13g00224 1403 FunFam DNA-directed RNA polymerase subunit 532 705 - -
Accr13g00224 1403 Pfam RNA polymerase Rpb1, domain 2 358 524 IPR000722 GO:0003677|GO:0003899|GO:0006351
Accr13g00224 1403 Pfam RNA polymerase Rpb1, domain 5 844 1336 IPR007081 GO:0003677|GO:0003899|GO:0006351
Accr13g00224 1403 Pfam RNA polymerase Rpb1, domain 1 23 356 IPR007080 GO:0003677|GO:0003899|GO:0006351
Accr13g00224 1403 SMART rpolaneu7 249 552 IPR006592 GO:0003677|GO:0003899|GO:0006351
Accr13g00224 1403 CDD RNAP_III_Rpc1_C 1039 1381 IPR035698 -
Accr13g00224 1403 Gene3D - 349 531 - -
Accr13g00224 1403 CDD RNAP_III_RPC1_N 33 894 IPR035697 -
Accr13g00224 1403 Gene3D - 1334 1388 - -
Accr13g00224 1403 Coils Coil 276 303 - -
Accr13g00224 1403 Gene3D RNA polymerase Rpb1, domain 3 532 705 IPR042102 -
Accr13g00224 1403 Gene3D - 706 823 IPR038120 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00224 Accr-Chr13 2167301 2190751 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00224 K03018 - qsa:O6P43_028309 2192.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr13g00224 13 2167301 2190751 Accr13g00224 13 2167301 2190751 ECH