Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00178 ATGGCTTCTTCTTCCTCAACGCTCTCCCTATTGGCCGTAGCTTCCTTCCTCTTCCTCGCCACTGTCACTGACGCAACCATCCTTACCCTGGTCAACAACTGCAAGTTCACCCTCTGGCCCGCCATCCAACCCAACGCCGGTCACCCCGTCCTCGCTCGCGGCGGCTTCGTTCTCCATTCCCTCACTCACATCTCCATTCCCCTACCGGATCGACACTGGTCGGGTCGGGTTTGGGCCAGAACAGGCTGCGGATACTCCGGCAACCAGTTCCTCTGCGCCACCGGAGACTGCGGTGGCCACCTGGAGTGCAACGGCGCCGGCGGCGCAGCTCCGGCATCTCTGGCTCAGTTCAGCGTCCACCATGGCGCGAATGACTACTCCTCCTACGGCGTGAGCCTTGTGGACGGCTTCAACGTCCCCATGACGGTGACCCCACATGAGGGTAAAGGCGTGTGTCCGGTGGTGGGTTGTCGTGTGGATCTGCTTGCCACGTGTCCTCCGGTGTTGCAGCACCGCGTACCGCAGGGTCATGGTCCGGTGATGGCGTGTAAGAGTGGGTGCGAGGCTTTTAGGACGGACGAGCTGTGCTGCAGGAACCATTTCAATAGCCCACAAATGTGTAAGCCCTCACTGTACTCAGATTTCTTCAAGCATGCGTGTCCTGCGACCTTCACTTATGCTCATGACAACCCTTCGCTAACGCACGAGTGTTCTTCCCCAAGGGAGCTCAAGGTCATATTCTGCCATTAG 750 0.5907 MASSSSTLSLLAVASFLFLATVTDATILTLVNNCKFTLWPAIQPNAGHPVLARGGFVLHSLTHISIPLPDRHWSGRVWARTGCGYSGNQFLCATGDCGGHLECNGAGGAAPASLAQFSVHHGANDYSSYGVSLVDGFNVPMTVTPHEGKGVCPVVGCRVDLLATCPPVLQHRVPQGHGPVMACKSGCEAFRTDELCCRNHFNSPQMCKPSLYSDFFKHACPATFTYAHDNPSLTHECSSPRELKVIFCH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00178 249 PIRSF PR5 1 249 IPR001938 -
Accr13g00178 249 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Accr13g00178 249 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Accr13g00178 249 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Accr13g00178 249 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Accr13g00178 249 PANTHER OS03G0233200 PROTEIN 15 248 IPR001938 -
Accr13g00178 249 Gene3D Thaumatin 26 248 IPR037176 -
Accr13g00178 249 CDD TLP-PA 27 248 - -
Accr13g00178 249 ProSiteProfiles Thaumatin family profile. 25 249 IPR001938 -
Accr13g00178 249 SMART tha2 28 249 IPR001938 -
Accr13g00178 249 FunFam Osmotin-like protein 27 248 - -
Accr13g00178 249 Pfam Thaumatin family 32 248 IPR001938 -
Accr13g00178 249 SUPERFAMILY Osmotin, thaumatin-like protein 27 248 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00178 Accr-Chr13 1589279 1590028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00178 7 248 Receptor kinase-like Gene Family AT5G38280 35.366 4.39e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00178 - - gmx:100818233 418.313