Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00169 ATGGGTCAGGGTCTGAGCTGCGCAGGGAGCCATGAACATGGCCTCTTCACTGCGGTACAGCATGGAGATAACTCCACTGTCAGAAATCTCTTACAGAGAGACCCATCTATTGTGCACCACACTACCGTCTACGATCGCCATTCTGCTCTTCATATCGCCGCTGCTAATGGCCAGATCGAGATTCTGTCTATGCTGTTAGATGGATCTGTTAATCCAGACGTCTTGAATCGTCAAAAGCAGACTCCGCTCATGTTGGCTGCAATGAACGGAAAGATCGCCTGTGTGAAAAAACTCCTTGAGGTTGGAGCTAATGTATTGATGTTTGATTCGCTTTACGGTAGAACCTGCCTGCACTATGCAGCCTACTATGGTCATTCTTCTTGCCTTGAAGCAATTCTTTCTGCGGCACAGTCTAGTCCAGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGGGATGGTAGAGGAGCGACGCCATTGCATCTGGCTGCCCGTCAGAGACGACCTCAATGTGTGCATATTCTATTAGATAATGGAGCTCTTGTCTGTGCTTCAACAGGCGGATATGGCTGTCCTGGGAGCACTCCTCTTCATTTAGCTGCCAGAGGGGGATCCCTGGATTGCATCCGTGAAATGTTGGCATGGGGTGCAGATCGCCTTCAACGGGATGCTTCAGGGCGGATACCATATGTAGTTGCTCTGAAGCATAAGCATGGAGCATGTGCAGCATTGTTAAATCCTACATCTGCTGAACCTCTTGTCTGGCCTTCACCTTTGAAGTTCATCAGTGAACTCAATCCAGATGCCAAAGCATTATTAGAACGGGCCTTGATGGACGCAAACAGGGAGAGGGAGAAAAATATATTGAAAGGAAGCGCTTACTCTCTTCCATCTCCATCAAATTCTGATAATGGGGTAGATGACAATATCTCCGAGGCCAGTGAGACAGAACTGTGCTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTCCAGGACTGTGGCCACCAGATGTGTGCACAATGCACTTTAGCCCTCTGTTGCCACAACAAGCCTAATCCTGCTACTGCTTGCCTTACTCCTCCAGTTTGTCCATTTTGCCGAAGCACCATAGCTAGACTGGTGGTTGTGAAGATAGAGAGTCACGAGGACACAGATGTAGAAGCTGGGGATGTCAGTTCTTCAATGTTAAGCAAGTCAAAGAAAGCCCGAAACTTGAATGAAGGCAGCAGCAACAGCTTCAAGGGACTATCATTCGGAAAGATGAGTGGACGCAGCTCTGGAAGGATTGCTGCGGACAATGAGTGGGTTGATAAAGAGTGA 1329 0.4831 MGQGLSCAGSHEHGLFTAVQHGDNSTVRNLLQRDPSIVHHTTVYDRHSALHIAAANGQIEILSMLLDGSVNPDVLNRQKQTPLMLAAMNGKIACVKKLLEVGANVLMFDSLYGRTCLHYAAYYGHSSCLEAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPQCVHILLDNGALVCASTGGYGCPGSTPLHLAARGGSLDCIREMLAWGADRLQRDASGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFISELNPDAKALLERALMDANREREKNILKGSAYSLPSPSNSDNGVDDNISEASETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTIARLVVVKIESHEDTDVEAGDVSSSMLSKSKKARNLNEGSSNSFKGLSFGKMSGRSSGRIAADNEWVDKE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00169 442 Gene3D - 144 250 IPR036770 -
Accr13g00169 442 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Accr13g00169 442 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Accr13g00169 442 SMART ANK_2a 157 186 IPR002110 GO:0005515
Accr13g00169 442 SMART ANK_2a 112 142 IPR002110 GO:0005515
Accr13g00169 442 SMART ANK_2a 194 223 IPR002110 GO:0005515
Accr13g00169 442 SMART ANK_2a 45 74 IPR002110 GO:0005515
Accr13g00169 442 SMART ANK_2a 78 107 IPR002110 GO:0005515
Accr13g00169 442 SMART ANK_2a 10 39 IPR002110 GO:0005515
Accr13g00169 442 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 16 133 - -
Accr13g00169 442 SUPERFAMILY RING/U-box 315 375 - -
Accr13g00169 442 Pfam Ankyrin repeats (many copies) 195 232 IPR002110 GO:0005515
Accr13g00169 442 MobiDBLite consensus disorder prediction 393 422 - -
Accr13g00169 442 SUPERFAMILY Ankyrin repeat 15 250 IPR036770 -
Accr13g00169 442 Gene3D - 9 143 IPR036770 -
Accr13g00169 442 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Accr13g00169 442 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Accr13g00169 442 CDD RING-HC_XBAT31-like 313 377 - -
Accr13g00169 442 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Accr13g00169 442 Pfam Ankyrin repeats (3 copies) 15 108 IPR002110 GO:0005515
Accr13g00169 442 ProSiteProfiles Zinc finger RING-type profile. 321 370 IPR001841 -
Accr13g00169 442 MobiDBLite consensus disorder prediction 389 442 - -
Accr13g00169 442 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Accr13g00169 442 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Accr13g00169 442 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Accr13g00169 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 389 IPR013083 -
Accr13g00169 442 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00169 Accr-Chr13 1496512 1499139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00169 50 247 Miscellaneous Gene Families AT5G02620 28.155 4.83e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00169 - - vvi:100263866 765.763