Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00061 ATGGACCCCGTTGAGCTGAAGCGTGTCTTCCAGATGTTCGATCGCAACGGGGACGGCCGAATCACGCACAAGGAGCTCAACGACTCGCTTGAGAGCCTCGGCATCTTCATCCCTCACAAGGATTTAAGCCAGATGATTGACAAGATCGACGTCAACGGAGACGGATGCGTGGACATGGAGGAGTTTGGTGAGCTATACAAGGCGATCATGGAGGAACGGAACGAGGAGGAGGACATGAGAGAGGCATTCGGCGTTTTTGACCAAAACAGCGACGGCTTCATCACCGTCGACGAGTTGAGATCAGTGTTATCGTCTCTTGGGTTGAAACAGGGAAGAGCGGTGGAAGATTGCAGGAAGATGATCATGAAGGTCGATGTGGATGGAGACGGGAGAGTTAATTACAGCGAGTTTAAGCAAATGATGAAGGGAGGTGGCTTCGGCGCTCTCGGCTAA 453 0.5232 MDPVELKRVFQMFDRNGDGRITHKELNDSLESLGIFIPHKDLSQMIDKIDVNGDGCVDMEEFGELYKAIMEERNEEEDMREAFGVFDQNSDGFITVDELRSVLSSLGLKQGRAVEDCRKMIMKVDVDGDGRVNYSEFKQMMKGGGFGALG 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00061 150 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Accr13g00061 150 SMART efh_1 78 106 IPR002048 GO:0005509
Accr13g00061 150 SMART efh_1 41 69 IPR002048 GO:0005509
Accr13g00061 150 SMART efh_1 5 33 IPR002048 GO:0005509
Accr13g00061 150 SMART efh_1 116 144 IPR002048 GO:0005509
Accr13g00061 150 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Accr13g00061 150 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Accr13g00061 150 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Accr13g00061 150 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Accr13g00061 150 Gene3D - 4 67 - -
Accr13g00061 150 Gene3D - 68 144 - -
Accr13g00061 150 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Accr13g00061 150 PRINTS Parvalbumin signature 87 103 - -
Accr13g00061 150 PRINTS Parvalbumin signature 65 83 - -
Accr13g00061 150 PRINTS Parvalbumin signature 124 137 - -
Accr13g00061 150 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Accr13g00061 150 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Accr13g00061 150 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Accr13g00061 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 77 142 - -
Accr13g00061 150 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Accr13g00061 150 FunFam calmodulin-like protein 3 72 145 - -
Accr13g00061 150 SUPERFAMILY EF-hand 5 143 IPR011992 -
Accr13g00061 150 FunFam Calmodulin-like protein 3 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00061 Accr-Chr13 585033 585485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr13g00061 1 149 EF-hand Containing Proteins AT1G05990 76.000 8.13e-78 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00061 K13448 - mof:131150350 266.159