Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr13g00032 ATGGCAGTGAATGATGCTGACCAGTCGCACAAGCCTCACAGGTCTCGTCAATCTGGTGCAAAGAAGGCCAAATCGGAAAAGAAGAAGAAGCAAGAAGTTGGCGATGATAGTCGCAAACAAAATCCTAAGGCGTTTGCTTTTGCGTCGTCCGCGAAAGCCAAAAGATTACAATCCCGTGCCGTCGAAAAAGAGCAGCGTCGTCTTCATGTTCCTATTATTGACCGGTCTAATGGTGAGCCAGCACCTTATGTCGTGGTGGTGCAGGGCCCTCCGAAGGTTGGGAAGTCGCTCTTAATAAAGTCATTGGTAAAACATTATACGAAGCAAAATTTGCCTGATGTTCGAGGTCCCATAACCATTGTATCAGGAAAGCAGAGGCGTCTGCAGTTTGTGGAATGCCCTAATGATATCAATGGCATGATAGATGCCGCAAAATTTGCAGATCTAGCATTGCTTCTTATAGATGGGAGTTATGGTTTTGAAGTGGAAACCTTTGAATTCCTTAATATATTACAAGTTCATGGGTTCCCAAAGGTCATGGGTGTTCTGACCCATCTTGATAAATTCAAGGATGCTAAAAAGTTGAAGAAAACAAAGCAACGGCTTAAACACCGTTTCTGGACTGAAATATATGACGGAGCTAAATTGTTTTATTTATCTGGTCTTATTCATGGAAAGTATCTTAAGCGCGAAGTGCACAATCTTGCCCGCTTTATCTCTGTTATGAAGTTTCATCCTCTATCTTGGCGAACTTCCCACCCTTATATTTTAGTGGATAGGTTTGAAGATATCACCTCGCCTGAAAGAGTTGAAGAAAATAAGAAATGTGACAGAAAAGTCACACTTTATGGTTATTTGAGAGGGTGTAATTTAAAAAGGGGAAATAAGGTGCACATAGCAGGAGTGGGTGATCATAGTTTAGCTGCTATCACTCTGTTACCTGATCCTTGCCCTCTACCATCTGCTGCAAAGAAGAAGGGACTGCGAGATAAGGAAAAGTTATTCTATGCTCCTATGTCTGGCCTTGGGGATCTTCTATACGACAAAGATGCTGTGTACATAAATATCAATGATCACTTTGTCCAGTTTTCAAAAGTTGATGATGAAAACTCATCCATGGCAGGCAAAGGGAAGGGCAGAGATGTAGGGGAGGCTTTGGTGAGATCACTTCAGAATACCAAATACTCAATCAATGAAAAACTAGAGAACAGCACTATCAATCTTTTTAGCCAAAAGTTAAATGTGTCATCAGAAGCACTACATGATGCACAAAGTAGAAATATAGAAAACAATGAAATGGATATGGATGGTTCGGAATCTGATCAAGATGAAGCTGTTCCACCCAATGCCATAACCGACAGTGAAACTAGTGGCTCTGAAGAAGATAGTGACACAAGAGATGATAAAGCTGCAATTGGAGATCACTTAAATGAATGTATTGAGTTTCATGGTGGAAGACGTAGGAGAAGAGCAGTGTTTGGAAATGATGTTGATCAAAATGATTTGAAGGGTTCATATGAAGAGGACGGGGCTATCAGTGATGATGCAGCATCATCTGACTCAGAATTTTCAGAAGAGAGTGATGATGATGAAGATGACGTGGGAGATGTGTCAAAGTGGAAGGAATTTTTGGCTGAAAGAGCTATCTTACGGCATACTCCTAGCTTGATGCAACTTGTGTATGGGAAGTCTACTGGTAATTCAACCAGTGTGAAGAAAGAGGATGATGGTAGTGAGGATGAAGAAAGTGAAGGTGAATTTTTTAAGCCTAAAGAGGAAGTTAGAAAGCAAAAAATGAGAGGGGGATTAGATGTTGAAAATGTCAACACTGAGGACTGTTCTAAGACTACAAAGTTTGTGGCTGTTAAACGCTGGGAAGACAAAGATTTTGAGCAAATTCGTGATCGTTTTGTTACTGGTGACTGGTCAAAAGCTGCACTGAGAAACCAAGTTTCTGAGGCTACTACTGGAGATAAATTTGATGCTGTCTATGGTGACTTTGAAGATTTAGAAGCTGGAGAGAAGTATGAGGGTCATCAGACAGATAGTGAAGTTGCTAAGATGGCACAGAAGGGTGAGGACTTGGAAGCTGAAGAGCGGAGGCTCAAGAAACTTGCTCTCCGCGCAAAATTTGATGCTCAATATGATAGCTCTGCATCATCTGATGAAGAAGCAAGTAATAGAAATGGGGCCAAGCTCCAACGCGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGCTGAAGGAGGAAATTGAACTTCGGAAACAGATGAATATAGCTGAACTCAATGATCTTGATGAGGCTACCCGATTAGAGATTGAAGGCTTTCAAACAGGAAGTTACCTAAGGTTGGAGGTTCATGATGTCCCTTATGAGATGGTTGAATACTTTGATCCTTACCACCCAATATTAGTGGGAGGGATTGGTCTTGCGGAGGAAAATGTTGGATACATGCAGGCTAGGTTCAAGCGGCATAGATGGCACAAGAAAGTTCTCAAGACTAGAGATCCTATAATTGTTTCTGCTGGATGGAGGCGTTATCAGACAACCCCGGTTTATGCTATTGAAGATCGTAATGGGAGGCATCGCATGCTTAAATACACCCCAGAACATATGCATTGCTTGGCTATGTTTTGGGGCCCTCTTGCCCCTCCAAACACTGGGATAGTTGCTGTCCAGAATTTATTGAACAATCAGGAATCATTTAGGATTACGGCAACCGCTGTTGTACTTGAGTTTAATCATGCAGCAGGGATAGTGAAGAAAATAAAGTTGGTTGGTCACCCTTGTAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTCACTTCAGATCTTGAAGTAGCCCGGTTTGAAGGTGCGGCTATTCGAACAGTCAGTGGGATCAGGGGGCAGGTCAAGAAGGCTGCAAAAGAAGATATCCTCAAGCAGTCAAAGAATGGAGGTCTTCCCAAAGAAGGAATTGCTCGTTGCACTTTTGAGGACAAAATTTTGATGAGTGACATTGTTTTCTTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTTTTTAATCCCTTAACAACAGCATTGCAGCCTCGTCAGAAGACCTGGCAAGGAATGAAAACAGTTGCTGAATTGAGAAAAGATTACAACCTTCCTGTACCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAATGCCACGGAAGTTCAATCCATTGGTGATTCCCAAATCTCTACAGGAAGCACTTCCTTTTGCGTCAAAGCCTAAAGATATACCTAGTCGTAAGCGGCGGTCATTTGCTGAGAGAAGGGCTGTTGTTAGGGATACTCATGAGCGTAAAGTTCATGCTCTTGTGCAGCAGCTCCAATTAATTAGAAATGAGAAGTTGAAAAAGCGAAAGCTTAAGGAGGAAGAGAAGAGGAAAGAACATGAAGCTGAGAGAGCAAAGGATGAGCAGTTGCTAAGAAAACGCCAGAGAGAGGAAAGGCGAGAGAGATATCGCGAAAAAGGTCTGGTGAGGTGGAGGCATCCAACCAAGAAAGGGGATAAAAGAAAACAGAGCTCTTCAAATATATGGAAAACAGTCACTTTGGGGCATTCAGACGGCGCTAATAAGCGACTTACGAGCAGCGATTGA 3630 0.4204 MAVNDADQSHKPHRSRQSGAKKAKSEKKKKQEVGDDSRKQNPKAFAFASSAKAKRLQSRAVEKEQRRLHVPIIDRSNGEPAPYVVVVQGPPKVGKSLLIKSLVKHYTKQNLPDVRGPITIVSGKQRRLQFVECPNDINGMIDAAKFADLALLLIDGSYGFEVETFEFLNILQVHGFPKVMGVLTHLDKFKDAKKLKKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYLKREVHNLARFISVMKFHPLSWRTSHPYILVDRFEDITSPERVEENKKCDRKVTLYGYLRGCNLKRGNKVHIAGVGDHSLAAITLLPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHFVQFSKVDDENSSMAGKGKGRDVGEALVRSLQNTKYSINEKLENSTINLFSQKLNVSSEALHDAQSRNIENNEMDMDGSESDQDEAVPPNAITDSETSGSEEDSDTRDDKAAIGDHLNECIEFHGGRRRRRAVFGNDVDQNDLKGSYEEDGAISDDAASSDSEFSEESDDDEDDVGDVSKWKEFLAERAILRHTPSLMQLVYGKSTGNSTSVKKEDDGSEDEESEGEFFKPKEEVRKQKMRGGLDVENVNTEDCSKTTKFVAVKRWEDKDFEQIRDRFVTGDWSKAALRNQVSEATTGDKFDAVYGDFEDLEAGEKYEGHQTDSEVAKMAQKGEDLEAEERRLKKLALRAKFDAQYDSSASSDEEASNRNGAKLQRGQANESSYFDKLKEEIELRKQMNIAELNDLDEATRLEIEGFQTGSYLRLEVHDVPYEMVEYFDPYHPILVGGIGLAEENVGYMQARFKRHRWHKKVLKTRDPIIVSAGWRRYQTTPVYAIEDRNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQNLLNNQESFRITATAVVLEFNHAAGIVKKIKLVGHPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEDILKQSKNGGLPKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFFNPLTTALQPRQKTWQGMKTVAELRKDYNLPVPVNKDSLYKKIERMPRKFNPLVIPKSLQEALPFASKPKDIPSRKRRSFAERRAVVRDTHERKVHALVQQLQLIRNEKLKKRKLKEEEKRKEHEAERAKDEQLLRKRQREERRERYREKGLVRWRHPTKKGDKRKQSSSNIWKTVTLGHSDGANKRLTSSD 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr13g00032 1209 MobiDBLite consensus disorder prediction 1186 1209 - -
Accr13g00032 1209 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 693 1013 IPR007034 -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 25 39 - -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 431 467 - -
Accr13g00032 1209 SMART aarp2cn2 231 317 IPR012948 GO:0005634|GO:0042254
Accr13g00032 1209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 218 IPR027417 -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 1087 1102 - -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 1083 1102 - -
Accr13g00032 1209 Coils Coil 688 708 - -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 556 604 - -
Accr13g00032 1209 Pfam AARP2CN (NUC121) domain 231 316 IPR012948 GO:0005634|GO:0042254
Accr13g00032 1209 MobiDBLite consensus disorder prediction 1131 1209 - -
Accr13g00032 1209 Gene3D - 83 245 IPR027417 -
Accr13g00032 1209 SMART DUF663_2 684 1012 IPR007034 -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 716 739 - -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 498 535 - -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 513 533 - -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 1131 1169 - -
Accr13g00032 1209 MobiDBLite consensus disorder prediction 1 51 - -
Accr13g00032 1209 Coils Coil 1105 1167 - -
Accr13g00032 1209 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 81 245 IPR030387 -
Accr13g00032 1209 CDD BMS1 55 274 IPR037875 GO:0005525
Accr13g00032 1209 MobiDBLite consensus disorder prediction 584 602 - -
Accr13g00032 1209 FunFam BMS1 ribosome biogenesis factor 83 245 - -
Accr13g00032 1209 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1161 IPR039761 GO:0042254
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr13g00032 Accr-Chr13 380985 388569 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr13g00032 K14569 - gmx:100792176 1665.59