Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01273 ATGTCCAGGCTGCTTCGAAAAGCTTACCTTCTCAAGAGCTCTCTTTTCGGCCATGACGTTAAAACAATGGGATTCAGACGTGAATTATTGGGCACATCGCAAATTTTAAGCTTCTCAAGTCGAGGTAAAAAGGGGTCAAAATCAGATGGAAGTGATTCATGTGAAGAAAATACATCTAAGAAAGAGTTGACCATACAAAAAACCCTGGATCAGATCACTTCTGCACATGGAAAGGGAACTATCATGTGGCTTGGTCGCTCTGCCTCAGAAAAACATGAACCTGTAGCTGTAGTGTCAACAGGTTCTTTTGCTCTTGATATGGCACTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTGGAAGTATTTGGGCCAGAGGCTTCTGGGAAAACTACTCTTGCCTTACATGTGATTGCAGAAGCGCAGAAGCAAGGAGGTTATTGTGCTTTTATTGATGCTGAGCATTCACTTGATAAAAAACTCGCGGGTGCTATTGGTGTAAATACTCAGAAATTGCTTCTCGCTCAACCTGAATGTGGTGAACTAGCACTTAGTCTTGTTGATACCTTGATTCAAAGTGATTCACTTGATGTAATTGTTGTTGACAGTGTAGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGTGAGATGGGCGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCACTTCGAAAATTTTGCCACTCTTTATCAAAGTCCAATTGTATATTGATTTTTACAAACCAGGTGAGGTCAAAGCTTTCTACTTTTGGGGGGTTTGGCGGGCCAACGGATGTGACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGCGAATAGGATTTGTTAAGAAGGGAGAAGAGGCTATAGGAAGCCAGATCCTTGTGAAGGTTGTGAAGAACAAGCTTGCTCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTTGGAAAGGGCATATGTAGAGAAGCAGAGATCGTAGATTTGAGCCTAAAACACAAATTCATATCCAAGTCTGGTTCATTTTACAATTACAAAGGCAAGAACTTCCATGGCAAGGATGCTCTTAAGAAGTTCCTGGCTAGTAACCCTAGTGTTCAAGAAGAACTTATTCTGAAGCTGAGGGAAAAGCTTCTTCTTACTGCTGAGAAAGAAGCAGAGGTGGCTGATGAAGATGAAGTTGTATCACCTTATTCTACTGATGAAGAAGCTGCTGCTATTGCTGCTGCAGAAGCATGA 1266 0.4258 MSRLLRKAYLLKSSLFGHDVKTMGFRRELLGTSQILSFSSRGKKGSKSDGSDSCEENTSKKELTIQKTLDQITSAHGKGTIMWLGRSASEKHEPVAVVSTGSFALDMALGVGGLPKGRVVEVFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHSLDKKLAGAIGVNTQKLLLAQPECGELALSLVDTLIQSDSLDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKFCHSLSKSNCILIFTNQVRSKLSTFGGFGGPTDVTCGGNALKFYASVRLNIKRIGFVKKGEEAIGSQILVKVVKNKLAPPFKTAQFELEFGKGICREAEIVDLSLKHKFISKSGSFYNYKGKNFHGKDALKKFLASNPSVQEELILKLREKLLLTAEKEAEVADEDEVVSPYSTDEEAAAIAAAEA 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01273 421 NCBIfam recombinase RecA 61 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 Gene3D - 93 396 IPR027417 -
Accr12g01273 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 329 IPR027417 -
Accr12g01273 421 Pfam recA bacterial DNA recombination protein 65 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Accr12g01273 421 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 PANTHER RECA 38 400 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 SMART AAA_5 116 290 IPR003593 GO:0016887
Accr12g01273 421 MobiDBLite consensus disorder prediction 45 60 - -
Accr12g01273 421 MobiDBLite consensus disorder prediction 39 60 - -
Accr12g01273 421 Hamap Protein RecA [recA]. 61 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 FunFam Recombinase RecA 92 392 - -
Accr12g01273 421 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Accr12g01273 421 CDD RecA 95 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Accr12g01273 421 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Accr12g01273 421 SUPERFAMILY RecA protein, C-terminal domain 331 386 IPR023400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01273 Accr-Chr12 15519109 15523936 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01273 K03553 - gmx:100798983 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g01273 12 15519109 15523936 Accr12g01273 12 15519109 15523936 ECH