Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g01217 ATGACCCCCGCCGAAGCCACCGAAAACGGCGCCGCCACGGCGTCGGAATCCCAACCACCTGTTATCGCATCAGACAATGCCTCCGCCGCTGAACTAGCCGCCGCCGCCGCCACTACCACCAAGGCTGCTGCTGATGCGGACGCCGCCCTGGTCAACCCAACCAGTGAGGAGCCCGAGTCCGAGATTCCTAAGGCAGACGAAGCTTCCGCCGATCAGACAGCTGCTACCACGACTAACGCTGTCCCTACCACTCCACCGGAGAAGAGATGGCCGGGTTGGCCTGGGGATTGTGTGTTCCGGCTCATTGTGCCGGTCCTGAAGGTGCTCATATCTGGGAAGGAAGAGCCCGAAGCAACTCTTTCCCCTGCAATGGATGCTGCAATAAGGGTATTTAAGCGTGTCTATGGATTGTCTGAAGGTGATGGTGAAGCAGGACCTGCTGGTGTTGCATATGTTTCTGTTCGTCTGTTGGTGGCATCAACACAGGCTATCAATTTGATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAGTACTGGTGCTTCTGCTCGTGTATTGTCTGGAGATGAGGTTCCATTTTATGCTGCTGCGGATGAGAGGATTGTAGAGTTGCAGGGAGAAGCCTTGAAGGTTCTTAAGGCTCTGGAAGCAGTAGTTGGCCACCTGCGAAAGTTCTTGGTCGATCATAGTGTTCTTCCCCTTTTTGAGAAAAAAACTTACAATACAACAACCTCACAAGACCGCCAGCCAGAATCCTGGGCGGACAAGACATCTCTGCATAGTGCTTCACAAGGTAGCATTAGTGCTGATGGACCTCTTTCAACAAAAAGGGATTCTCTCTTTGTCGAGCGTGAAACTCATTTGGATTCACAACTCCCATCCTCTGCAATGTCACTCTATGGGCAAGATTCTTCACTTCCTGGCGTTCGTTCTTCAACATTTGGTCGTGGCGGGGCTCCCATTGTCACCAATGTGATACAAACAATGCAAATACCACTATCCTATGCGGAGGACATCATTGGGATTCAAGGGACTAATATTGCTTACATTCGCCGTACCAGTGGAGCCATACTGACTGTGCAAGAGAGTAGGGTGCCCGATGAAATTATTGTGGAAATTAAAGGCACCACAACACAAGTCCAATTGGCACAACAGTTGATTCAGGAAGTGATAAGCAATCACAAAGAACCAGCCTCTAGCAGTTACGGTAGGTTAGATGCAGGTGGCGGTCTGAGGTCTTCATATGCTCAATTGGGAGGCAGTACAACCTACTCATCTTCCTCAGTGACCTCACAGCCCTACACAGGTTATGGCTCTTCTGGTTTAGGAGGCTACGGTACTTTTAGACTCTGA 1359 0.5018 MTPAEATENGAATASESQPPVIASDNASAAELAAAAATTTKAAADADAALVNPTSEEPESEIPKADEASADQTAATTTNAVPTTPPEKRWPGWPGDCVFRLIVPVLKVLISGKEEPEATLSPAMDAAIRVFKRVYGLSEGDGEAGPAGVAYVSVRLLVASTQAINLIGKQGSLIKSIQESTGASARVLSGDEVPFYAAADERIVELQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKKTYNTTTSQDRQPESWADKTSLHSASQGSISADGPLSTKRDSLFVERETHLDSQLPSSAMSLYGQDSSLPGVRSSTFGRGGAPIVTNVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTTTQVQLAQQLIQEVISNHKEPASSSYGRLDAGGGLRSSYAQLGGSTTYSSSSVTSQPYTGYGSSGLGGYGTFRL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g01217 452 MobiDBLite consensus disorder prediction 244 276 - -
Accr12g01217 452 MobiDBLite consensus disorder prediction 41 89 - -
Accr12g01217 452 CDD KH-I_PEPPER_rpt2_like 153 225 - -
Accr12g01217 452 Gene3D K Homology domain, type 1 325 422 IPR036612 GO:0003723
Accr12g01217 452 MobiDBLite consensus disorder prediction 1 27 - -
Accr12g01217 452 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 108 411 - -
Accr12g01217 452 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 323 395 IPR036612 GO:0003723
Accr12g01217 452 MobiDBLite consensus disorder prediction 1 24 - -
Accr12g01217 452 MobiDBLite consensus disorder prediction 70 84 - -
Accr12g01217 452 SMART kh_6 325 394 IPR004087 GO:0003676
Accr12g01217 452 SMART kh_6 150 225 IPR004087 GO:0003676
Accr12g01217 452 Pfam KH domain 329 391 IPR004088 GO:0003723
Accr12g01217 452 Pfam KH domain 154 220 IPR004088 GO:0003723
Accr12g01217 452 MobiDBLite consensus disorder prediction 244 275 - -
Accr12g01217 452 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 148 232 IPR036612 GO:0003723
Accr12g01217 452 Gene3D K Homology domain, type 1 151 227 IPR036612 GO:0003723
Accr12g01217 452 ProSiteProfiles Type-1 KH domain profile. 151 220 - -
Accr12g01217 452 ProSiteProfiles Type-1 KH domain profile. 326 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g01217 Accr-Chr12 14128136 14132519 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g01217 K21444 - qsa:O6P43_022369 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g01217 12 14128136 14132519 Accr12g01217 12 14128136 14132519 ECH