Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00980 ATGGCAGGAGGGTCTTTTGCAGGAGGAGGTGGTGGCGCTAAAGAGAGGGCAAGTCAGTACAAAGGAAAAGTTACAGCTTATGTGGTGATTGCTTGCATTGTTGCTGCCACTGGTGGCTCCCTCTTCGGCTATGATATTGGAATCTCAGGTGGGGTTACTTCCATGGATGATTTTCTTAAGGATTTCTTCCCCACAGTTTACAGAAACAAGAGGCACGCACATGAAAACAACTACTGCAAGTACAACAACCAAGGCCTTGCAGCTTTCACCTCTTCTCTTTACCTTGCTGGTTTAGTTGCATCTCTCCTGGCTTCTCCGGTCACCAGAAAGTACGGCCGGAGAGCCAGTATCATCGCCGGTGGTGTCAGCTTCCTCATTGGATCAGCCCTTAATGCCTCAGCTGTTAATCTCGCAATGCTCCTCTTAGGTCGAATCATGCTCGGTGTTGGCATTGGATTTGGAAACCAAGCGATTCCTCTGTATTTGTCGGAGATGGCACCGACCCACCTGCGAGGAGGTCTGAACATGATGTTTCAGGTAGCCACAACATTTGGGATTTTTACAGCAAACATGGTAAATTATGGGACACAGAACATTACACGATGGGGATGGAGATTATCTCTAGGATTAGCAGCAGTACCAGCTCTGTTAATGACAGTGGGAGGGATATTTCTTCCTGATACACCAAACAGCTTAATAGAAAGAGGATTAAAAGATAAAGGAAGGAAGCTTCTAGAAAAAATCAGAGGGACGAAAGATGTTGAAGCAGAGTTTCAGGACATGATCGAAGCGAGCGAGTTTGCTGAGTCAGTTAAACACCCTTATCGGAATATACTGCAAAGGAAGTACCGGCCAGAGTTGGTGATGGCCATCTTCCTGCCGGCGTTTCAGATTCTGACGGGGATAAATACGATTCTGTTCTATGCTCCCGTTTTGTTTCAGAGTATGGGGTTCGCCGGAGATGCGTCGCTGTACTCGTCAGCGACGACCGGTGGGGTTCTTGCTTTCTCAACCTTCATTTCCATTGCAGCAGTAGATAGATTAGGAAGAAGGCCTTTGCTTATCAGCGGTGGGGTCCAAATGATTACGTGTCAGATAATTGTGGCTACAATCCTGGGAATCAAGTTTGGAAATTACCAACATCTATCCAAAAGCTCTTCAATATGGGTTGTGGTTGTGATATGTCTATTTGTGTTGGCCTTTGGATATTCATGGGGCCCACTTGGGTGGACAGTGCCAAGTGAAATATTTCCATTAGAGATCAGATCAGCAGGCCAAAGCATAACAGTTGCAGTAAATCTTGTTTTCACATTCATGGTTGCTCAAGCTTTTCTTTCTCTCTTGTGTGCTATGAGGTTTGGTATCTTCCTCTTCTTTGCTGGGTGGATCACATTAATGACTCTCTTTGTTTTCCTCTTCTTGCCTGAAACTAAGGGAATCCCCATTGAAGAGATGTCCTTCATGTGGAGAAGACACTGGTTCTGGAAAAAGATTCTCCCCGCTGAATCAGAATCTCAAGATGCCAAAATAAAAACTTCCATGGATTCATCTGATGGTGCAGCTTGA 1566 0.4547 MAGGSFAGGGGGAKERASQYKGKVTAYVVIACIVAATGGSLFGYDIGISGGVTSMDDFLKDFFPTVYRNKRHAHENNYCKYNNQGLAAFTSSLYLAGLVASLLASPVTRKYGRRASIIAGGVSFLIGSALNASAVNLAMLLLGRIMLGVGIGFGNQAIPLYLSEMAPTHLRGGLNMMFQVATTFGIFTANMVNYGTQNITRWGWRLSLGLAAVPALLMTVGGIFLPDTPNSLIERGLKDKGRKLLEKIRGTKDVEAEFQDMIEASEFAESVKHPYRNILQRKYRPELVMAIFLPAFQILTGINTILFYAPVLFQSMGFAGDASLYSSATTGGVLAFSTFISIAAVDRLGRRPLLISGGVQMITCQIIVATILGIKFGNYQHLSKSSSIWVVVVICLFVLAFGYSWGPLGWTVPSEIFPLEIRSAGQSITVAVNLVFTFMVAQAFLSLLCAMRFGIFLFFAGWITLMTLFVFLFLPETKGIPIEEMSFMWRRHWFWKKILPAESESQDAKIKTSMDSSDGAA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00980 521 Pfam Sugar (and other) transporter 32 489 IPR005828 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 Gene3D MFS general substrate transporter like domains 20 492 IPR036259 -
Accr12g00980 521 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 17 498 IPR045262 GO:0015144
Accr12g00980 521 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 PRINTS Sugar transporter signature 414 426 IPR003663 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 PRINTS Sugar transporter signature 391 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 PRINTS Sugar transporter signature 297 307 IPR003663 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 CDD MFS_STP 34 476 IPR044778 GO:0015145|GO:0015749
Accr12g00980 521 ProSitePatterns Sugar transport proteins signature 2. 146 171 IPR005829 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 FunFam Sugar transport protein 13 21 492 - -
Accr12g00980 521 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 478 IPR020846 GO:0022857
Accr12g00980 521 SUPERFAMILY MFS general substrate transporter 25 485 IPR036259 -
Accr12g00980 521 NCBIfam sugar porter family MFS transporter 20 485 IPR003663 GO:0016020|GO:0022857|GO:0055085
Accr12g00980 521 ProSitePatterns Sugar transport proteins signature 1. 341 358 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00980 Accr-Chr12 10308052 10311103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00980 1 514 Organic Solute Cotransporters AT4G02050 74.708 0.0 820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00980 K24193 - gmx:100820434 849.736