Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00946 ATGGCGAAATTGAAGATTGCCGGAACATGGTCAGGAGTGTTAGAGGTTGAACTCGAGACTTGGACGCTACCCATGTTGAGAGAAGAAATCGCCACGCGATCCAACATCGGCGTCGACTCCATCAATTTGATATGCGCCGGAAAAATTTTGAAAGACGGCGATGGCCAAGAGAAATTGAACCAACTCGGTATGAAAAATAACACCAGAATTCTTGCGAATCGTATCTGTGCTGAAGAAGGCAAGGTTTTGATGGCCGAGGAGGAACGCACCAGCAGGCTTGCCCGAGTCAAGGCAGCTGCCACAGCACTCGCCAGTAGGCATTCTGATGGGTCATTACCTATGGAAGACTTCAACATTGAAGTTGAAGATCAAAGTGGAAAAAAAGTGCAGTTAGGTTCGGAGACAGATCAGAGGGCAGTAATGATGGGATTGATGCTTCATGCAAATGGAAAACGTCTTATCAGACAGAAAAAGTACAATGATGCTTTAGAAGTGCTCTCAATGGGTGAGGAATCATTCTCTATTTGTGATCCGAAGGTCATTGAGCTTGTTGACAATGTTCCAATACTGCAAATTGACATGGTGTGGTGCTACTTTATGATCCGAGACATCAGATGGCTATCGGAGGCTGGAAAGCGTCTTGAAATGGCTAGGGCTGGAATTGAGCGTTCTCATGGAAAGGATTCCCTTCGCCTTAGACTTCTACAGGGAGGTTGCTATCCTGAACTTGCACTGCATTTAAGACTAGAGCTACTTGAAGGGGTGGTGGCTTATCATAGTGGTAAGTTGGATAAAGCAAGAGATGCGCTGACTTCTGCAAAAGCAAAATTCATCCGGCTGCAAGTGTCAGATGAAACCTTATCATTTGTTATGAGCATGGGATTCAAAGAGCGTGATGTAAAGCGAGCATTGCGGATGAACAATCAAGATGTGGGAAGAGCCGTTGATTTTCTCGAGGAGGAGAAGGCAAAGAAACAGCGAAAACGGGAAGAAGATATAAGTAGAAGAAATGAAATTATGGAACAAAAGCATTATGGGCTGACACCTTTAAAGAAAGCTGTGGATCTGCAGAAGTTGAAGGATTTGGTCTCTTTGGGATTCGAGAAGGAACTTGCTGCCGAAGCCCTTCGAAGAAATGAAAATGATTTTGACAAGGCATTGAATGATTTGACTAATCCAGAAGCTAATTCTGATATACAGGTTCACATTGAGACAAGGAAAACAAAACGGCAGAGGCAATCAAAAGAGTCTCAAATTGAAAATCTTGTCCGCATGGGGTTTGAAAGATCAAGAGTGGTAGCTGCTGTCGAGGCTGGTGGCTCTTTGGATCAAATAGTGGAAAGACTGACCGCTCAACCTGAGGAAATCATGCAAATAGAAGCAAGTTTAACTGCTAACACTGCGAGTTCTTCTGCTCCTTTGCCAGATGACATTCCAGGCCAAACTGAGGACGTTGAAGGTCTATTGGAAGATCTCGGCAAAGAGGAGGAGCGAGATGTGGAAATGGAAGATGAGCTTTCTGCAGATATTGCAAAAGCTGATGATGCGTTGGCTGACTATGATATCGAAGTTAATATAGAAGGGGAAGCCATAACAGAATACCTGTCCCTGTTGGAGTCAGCAGCAGGCAGCAGCAGTGGGCAAAAGTTGCCTTCTCAGTAA 1662 0.4458 MAKLKIAGTWSGVLEVELETWTLPMLREEIATRSNIGVDSINLICAGKILKDGDGQEKLNQLGMKNNTRILANRICAEEGKVLMAEEERTSRLARVKAAATALASRHSDGSLPMEDFNIEVEDQSGKKVQLGSETDQRAVMMGLMLHANGKRLIRQKKYNDALEVLSMGEESFSICDPKVIELVDNVPILQIDMVWCYFMIRDIRWLSEAGKRLEMARAGIERSHGKDSLRLRLLQGGCYPELALHLRLELLEGVVAYHSGKLDKARDALTSAKAKFIRLQVSDETLSFVMSMGFKERDVKRALRMNNQDVGRAVDFLEEEKAKKQRKREEDISRRNEIMEQKHYGLTPLKKAVDLQKLKDLVSLGFEKELAAEALRRNENDFDKALNDLTNPEANSDIQVHIETRKTKRQRQSKESQIENLVRMGFERSRVVAAVEAGGSLDQIVERLTAQPEEIMQIEASLTANTASSSAPLPDDIPGQTEDVEGLLEDLGKEEERDVEMEDELSADIAKADDALADYDIEVNIEGEAITEYLSLLESAAGSSSGQKLPSQ 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00946 553 SMART uba_6 355 392 IPR015940 -
Accr12g00946 553 SMART uba_6 283 320 IPR015940 -
Accr12g00946 553 SMART uba_6 415 451 IPR015940 -
Accr12g00946 553 SUPERFAMILY UBA-like 275 321 IPR009060 GO:0005515
Accr12g00946 553 Gene3D - 357 393 - -
Accr12g00946 553 Pfam UBA/TS-N domain 288 318 IPR015940 -
Accr12g00946 553 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 393 IPR015940 -
Accr12g00946 553 Gene3D - 259 324 - -
Accr12g00946 553 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 281 321 IPR015940 -
Accr12g00946 553 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 413 438 IPR015940 -
Accr12g00946 553 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 2 542 IPR039749 -
Accr12g00946 553 SUPERFAMILY UBA-like 350 400 IPR009060 GO:0005515
Accr12g00946 553 SUPERFAMILY UBA-like 410 455 IPR009060 GO:0005515
Accr12g00946 553 ProSiteProfiles Ubiquitin domain profile. 22 70 IPR000626 GO:0005515
Accr12g00946 553 SUPERFAMILY Ubiquitin-like 20 71 IPR029071 -
Accr12g00946 553 CDD UBA 359 388 - -
Accr12g00946 553 Gene3D - 412 476 - -
Accr12g00946 553 Coils Coil 301 343 - -
Accr12g00946 553 Gene3D - 5 74 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00946 - - aip:107630532 733.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00946 12 9881065 9885820 Accr12g00946 12 9881065 9885820 ECH