Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00662 ATGGCGATGAGCATTGGTATCATGGACAGTGCTTACTTTGTCGGCCGGAATGAGATTTTGACTTGGATCAACAAAAGACTTCAAATCAATCTCTCTCGCATTGAGGAGGCTGCATCGGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGCTGTTCCAATGCACAAGGTGAATTTTGATGCGAAGTCAGAGTATGATATGATCCAGAATTACAAAATTCTTCAGGAAGTATTCAACAAGCTGAAGATTGAGAAGCATATTGAAGTTAACAGGCTTGTTAAAGGCCGACCTTTGGATAACCTGGAATTTCTACAATGGCTGAAGCGATATTGCGACTCTGTTAATGGCGGTATTATGAATGAGAATTATAATCCCGTGGAGCGCAGGAGCAAGTGTGGAAGGGATAAAAATGTCAAGAGTTCTACGAAGAGCTCAAAGTCACTACAAACGAATGTTGTTAATGATTCTGTTTCAGGCAACACACTCAGTCCTAATAGAACCTCTGGGCCCAAGCAACAAAGGTCGAGTTGTGCAGCAGGCATGACTAATACTTCAGTAGATGTTCAAGCTTTGTCCAAGGAGATAACTGACCTCAAACTCTCCCTGGATATCCTGGAAAAAGAAAGAGACTTTTATTATGCAAAACTAAGGGACATAGAAATTCTCTGTCAGACACCACAACTGGAGAATGGACCTATGTCTATAGCAGTCAAGAAGATTTTGTATGCGGCTGATGCGAAGGAGTCAGCGTTAGATGAAGCTCAGGATTACCTTAATCAAATTTTGGAATCTGCTCAATCTGAAGAAGAAGAAGAAGCAGAAGCAGAAACTGAAGCTTGA 849 0.4193 MAMSIGIMDSAYFVGRNEILTWINKRLQINLSRIEEAASGAVQCQMMDMTYPGAVPMHKVNFDAKSEYDMIQNYKILQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRSKCGRDKNVKSSTKSSKSLQTNVVNDSVSGNTLSPNRTSGPKQQRSSCAAGMTNTSVDVQALSKEITDLKLSLDILEKERDFYYAKLRDIEILCQTPQLENGPMSIAVKKILYAADAKESALDEAQDYLNQILESAQSEEEEEAEAETEA 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00662 282 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Accr12g00662 282 FunFam Microtubule-associated protein RP/EB family member 1B 189 264 - -
Accr12g00662 282 SUPERFAMILY EB1 dimerisation domain-like 191 249 IPR036133 GO:0008017
Accr12g00662 282 Gene3D - 183 255 - -
Accr12g00662 282 Pfam EB1-like C-terminal motif 208 246 IPR004953 GO:0008017
Accr12g00662 282 Coils Coil 191 211 - -
Accr12g00662 282 MobiDBLite consensus disorder prediction 132 182 - -
Accr12g00662 282 SUPERFAMILY Calponin-homology domain, CH-domain 3 132 IPR036872 -
Accr12g00662 282 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Accr12g00662 282 FunFam RP/EB family microtubule-associated protein 6 134 - -
Accr12g00662 282 Coils Coil 254 282 - -
Accr12g00662 282 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 272 IPR027328 GO:0008017
Accr12g00662 282 Gene3D - 6 134 IPR036872 -
Accr12g00662 282 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 183 253 IPR004953 GO:0008017
Accr12g00662 282 MobiDBLite consensus disorder prediction 145 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00662 Accr-Chr12 6244117 6247329 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00662 K10436 - gmx:100808026 430.254