Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00616 ATGAAGAGAGGCAAATTAGTTAAGTTAGATAATTTTGTATCATTGACAAGGCAGAGATCAGTCCAGATTCTGATCGGGGTTGGGCTTTTGTATTTACTGTTGGTCACAGTAGAAATCCCTTTTGTATTCAAAACTGGGTTTAGTTCTGTGTCTCAGGAGTTCTTAACTCGCCCTTCTAAGCTTGAGAGCGAGGAGGACTTGGAAGAAAGAGAGGCCCCTTCTCGTCCGCTGGAAAAAGTTTCTTTAAACGCGTACCAACCGATTCCGAGCCAACTCGCTGAGCACAAGATTCTTTCAGGGTTGATCTTTGATAACAGTACATTCGATTTGCGCCGTAAGGATGGGTCTCTGGAGCTTTACAAGTCAGCTAAGAATGCGTGGAAAGTGGGGAAGAAAATATGGGATGAGCTAGAATCCGGGAAATCGCGAGCCGCCGCCAAGAAATCCGATAGCCGATCGGATTCGTGCCCTCGATCGATTTCCTTGTCTGGGTCGGATTTTTTGGCCTATGGGCGACTCATGGTTCTCCCTTGTGGGCTTACATTGGGGTCTCACATAACCGTTGTGGCAAAGCCGTTGGCGGCGCACGCAGAGTTCGAACCGAGGATATCGTTGGCGAATAATGGTGATGAACCGGTGATGGTGTCACAGTTCATGATGGAGTTGCAGGGTTTGAAAACAGTGGACGGCGAGGAACCCCCAAGGGTTTTGCACTTTAATCCCAGATTGAAAGGAGATTGGAGTGGGAAGCCTGTGATTGAGCTTAACACCTGTTACAGAATGCAGTGGGGTTCCGCACTTCGATGTGATGGTTGGAAATCCAAGGCTGATGAAGAGACCGTTGATGGGATGGTGAAGTGTGAGAAGTGGATTCGGGACGATGACAATCATGCTGAGGAGTCCAAGTCTAGATGGTGGGTGAATAGATTGATAGGCCGGACCAAGAAAGTTTCAGTTGACTGGCCATTCCCATTTTCTGAGAGCAAGCTATTTGTTCTCACTCTTAGTGCTGGGTTGGAGGGTTATCATATTAATGTTGATGGCAGACATGTGGCATCTTTTCCTTATCGTACTGGTTTTACTCTTGAGGATGCCACTGGTCTTTCTTTGAGTGGGAACATTGATGTCCACTCTGTATTTGCTGCCTCTTTGCCTTCAACCCATCCAAGTTTTGCCCCACAGAAGCATCTTGATTGGTCAAGTAGATGGCGTGCCCCTCCTCTTCCAAATTTTGATGTTGAAATGTTCATTGGCATCCTTTCTGCTGGGAATCACTTTGCTGAGCGGATGGCTGTAAGAAAGTCATGGATGCAACATAGGCTCATTAAATCTTCAAAAGTGGTGGCCCGTTTCTTTGTTGCACCGCATCCCAGAAAAGAAGTAAATGCAGAGTTAAAGAAGGAAGCAGAATATTTTGGTGACATTGTTGTAGTGCCCTACATGGATAACTATGACCTTGTTGTGCTGAAAACAGTGGCCATTTGTGAATATGGGGTTCGCACAGTTAATGCCAAGTATATCATGAAGGGTGATGATGACACTTTTGTAAAAGTGGACGCTGTATTGGAATTAGCAAGGAGCTTTCCGGATGACAAGAGCTTCTATATTGGGAACATAAACTACTACCATAAGCCCTTGCGCTATGGTAAATGGGCGGTGACATACGAGGAATGGCCTGAAGAGGATTACCCACCCTATGCTAATGGACCTGGTTATATTTTGTCGTCTGATGTTGCACGCTTCGTTGTATCTGAATTTGAAAGGCATAAATTAAGGTTGTTTAAAATGGAAGACGTAAGTATGGGAATGTGGGTAGAGCAATTCAACAAGACGAAGCCGGTTGAGTATTTGCACAGCTTGAGTTTCTGCCAGTTTGGTTGCGTAGAAGGGTATTTAACGGCTCATTACCAATCGCCAAGGCAGATGATGTGTATGTGGGACAAATTGCAGAGACAGACAACTCCGGAGTGCTGCAACATGAGATGA 1986 0.4567 MKRGKLVKLDNFVSLTRQRSVQILIGVGLLYLLLVTVEIPFVFKTGFSSVSQEFLTRPSKLESEEDLEEREAPSRPLEKVSLNAYQPIPSQLAEHKILSGLIFDNSTFDLRRKDGSLELYKSAKNAWKVGKKIWDELESGKSRAAAKKSDSRSDSCPRSISLSGSDFLAYGRLMVLPCGLTLGSHITVVAKPLAAHAEFEPRISLANNGDEPVMVSQFMMELQGLKTVDGEEPPRVLHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEETVDGMVKCEKWIRDDDNHAEESKSRWWVNRLIGRTKKVSVDWPFPFSESKLFVLTLSAGLEGYHINVDGRHVASFPYRTGFTLEDATGLSLSGNIDVHSVFAASLPSTHPSFAPQKHLDWSSRWRAPPLPNFDVEMFIGILSAGNHFAERMAVRKSWMQHRLIKSSKVVARFFVAPHPRKEVNAELKKEAEYFGDIVVVPYMDNYDLVVLKTVAICEYGVRTVNAKYIMKGDDDTFVKVDAVLELARSFPDDKSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDVARFVVSEFERHKLRLFKMEDVSMGMWVEQFNKTKPVEYLHSLSFCQFGCVEGYLTAHYQSPRQMMCMWDKLQRQTTPECCNMR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00616 661 SMART Gal_bind_lectin_2 176 381 IPR001079 GO:0030246
Accr12g00616 661 Pfam Galactosyltransferase 428 608 IPR002659 GO:0006486|GO:0016020|GO:0016758
Accr12g00616 661 FunFam Hydroxyproline O-galactosyltransferase GALT2 296 380 - -
Accr12g00616 661 FunFam Hydroxyproline O-galactosyltransferase 406 649 - -
Accr12g00616 661 Gene3D - 173 380 - -
Accr12g00616 661 Pfam Galactoside-binding lectin 172 380 IPR001079 GO:0030246
Accr12g00616 661 Gene3D - 411 657 - -
Accr12g00616 661 SUPERFAMILY Concanavalin A-like lectins/glucanases 174 380 IPR013320 -
Accr12g00616 661 FunFam Hydroxyproline O-galactosyltransferase GALT4 171 289 - -
Accr12g00616 661 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 172 382 IPR001079 GO:0030246
Accr12g00616 661 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 363 610 IPR002659 GO:0006486|GO:0016020|GO:0016758
Accr12g00616 661 CDD GLECT 176 380 IPR001079 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00616 Accr-Chr12 5753393 5756520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00616 5 661 Glycosyltransferase AT1G74800 66.766 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00616 K20843 - qsa:O6P43_022779 1046.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00094 8 1370822 1374053 Accr12g00616 12 5753393 5756520 CCT
Accr12g00616 12 5753393 5756520 Accr12g00616 12 5753393 5756520 ECH