Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00549 ATGCAGAGTTCAAAGACTTCAAGTTACAGCAACAAATCACGATCAACACCTGCGAAGGCAAGAGACTCTTCGATTGTATCAAATGTATTGGCAAAGTCAGCTTCCTCATGGGATAAGGTGTACCGGTTTTCCATTGATTATCTTTTAGTTGCAAAGTCAGCAGTTAGTTGTGGATCATATTTTACCTCTGTGATGTATGTGGAACATTGGTGTGAAGAGCAGTTCATGGGTATGACTTTGGGGGGGCCAGATTTCTCCCACAAGAAAATGTTGCCAGATCATATTGAAATACTTGTCTCAGCAATCACTAGAATCAATGAACCTGATAGCTTATATGGAATTCTTCAGTCTCACAAGTTGCGTTCTCAAATCATTACCTTCGAGCATGAGGGAAACTGGGGAAAGGCCCTTGAATACTATGACTTGCTCGCACGATCAGATGTTTCAAAACTGGAGGATAGCAGTTTTTTAAGTTTGCCATCAGATCACACCCAAGCAGCAGATTCTTCATCTATTTCCACAAATGTTGATCAGATAATGCAATTCAAGCCTTACAAAGGGCTGATTAGATCGTTACAGCAGATTGGATGTACTCATGTCCTGGACTTGTATTGCCATGGGTTAACATCAAGGAATGACCAGCTTCAGCATGATTTAGAGTTCGCTGGAATGCAGTATGAGGCTGCTTGGCGTGCTGGGAATTGGGATTTCTCTTTACCTTATACAGGAGCTAATTCTACTCCTTTAACTCAGAATATCAAATGTGATCATTTTAATCACAATCTGCACAGTTGTTTGAGGGCACTCCAGGAGGGGGACTTGAATGACTTCAGTAGAAAGTTGAAAGATTCAAAGCAGGAGCTTTTGTGGTCTGTTTCTCAAACAAGTGAAGAGAACACACAGTACATTTACTCCAAGATAATGAAACTTCAGATGCTTTATCATCTTGGCATGGCATGGGATTTACGTTGGAGATCATCTCAACATAAAAGTTCAAAGCTCTGTCTTGAAAAGCAAAACGTGTCTCCTGAGCCTTTGATTCCTACCATTGAACAGTTGTCATGGCTGAACTCGGATTGGTGCTCAATTTTGGAACGCATGCAGCTGCATATGAATCTGTTAGAACCTTTTATATCATTTCGGCGGGTTCTACTTCAGATATTAAGTTGTAGAGATTATACTTTGCAACATCTTCTGCAGTCTGCCTCCACTCTTCGAAAGGGATATAGGTTCTCTCAAGCAGCAGCTGCATTGCATGAGTTTAAGTTCCTTTGTGTTGAAGCCAATGGGGAATCTTCATCCATGTATTGGCTAGGAAGGCTTGAAGAAGCAAAGCTTTTGCGAGCTCAAGGTCAACATGAGATGGCTATCAACCTAGCAATGTATATTTCAGGGAACTATGGGTCTAATAATGAGGCTTCAGATGTATATCGGTTGATTGGGAAGTGGCTCGCAGAAACCAGATCTAGCAACTCTAGAACAATTTTAGAGAAATATTTGAAACCTGCAGTCTCAATCTCTGAGGATGTGAGCACTGCTGATAAGAAGTCCATGGAACGAAAATGTCAGACTCACTTTCATCTTGCACATTATGCTGATGTGCTATTTAGGAGCCATGAAGAAAGACTCAACTCTAGTGAGTGGCAAGCAGCAATGCGGTTAAGGAAACATAAGAAAGTGGAGTTGGAAGCGCTAGTTAAAAGATTAAGGAGCTCAAAAAAGGGGGAGAAAACTGACTATTCCTCGAAAATACACGAACTGCAAAAGCAAGTAGCTATGGATGAGGAAGAGGCTCAGAAAGTGCAGGATGACCGAGACAATTTTCTTAGCCTGGCTTTGGAGGGATATAAGCACTGTTTGGTCACTGGAAACAAGTACGACGTGAGGGTGGTGTTTCGTCTAGTTTCTTTGTGGTTCAATCTCTCTTCTCGAAAAAATATAGTGAGCTCTATGCTTAGTACAATTGATGAGGTTCAATCTTTTAAATTTTTACCTTTAGTGTACCAAATTGCTTCTAGAATGGGTAGCTCAAAGGATGATCAGGGAACTTATAATTTCCAGTTTGCTTTGGTGTCCCTTGTGAAGAAAATGGCCATTGATCATCCATACCATACAATCCTTCATCTTTTGGGTCTGGCAAATGGGGACCGCATCAAGGATAATCAGCGTAGTAGAAGTTCTTTTGTGGTTGATATGGACAAAAAGCTTGCAGCAGAAAACCTTCTACATGAGCTATCGTCTTATCATGGAGCTATTATCCAACAAACAAGGCAAATGGTGGAGATTTATATCAAACTTGCAGAGATGCAAACAAGGAGAGAGGATATGGATAAAAGGGTGACTCTACCAAGAGAATTACGCAGCATTCCAGCACTGGAACTTGTACCTGTAGTCACAGCTACTGTTCCAATCGACTATAGTTGCCAGTATCATGATGGAACTTTTCCTTATTTCAAAGGGCTAGAAGATTCAGCAAAGATAATGAATGGTATAAATGCTCCAAAAGTGGTTGAATGCCTTGGATCTGATGGTTGCACGTATCGGCAACTTGCAAAATCTGGAGATGACGACCTAAGACAGGATGCTGTGATGGAACAATTCTTTGGTTTAGTTAACACATTCCTGAGGAACCACCGAGATACTCGGAAAAGAAGGTTAAATATACGAACCTACAAGGTGGTTCCCTTCACACCAAGTGCCGGTGTTCTTGAGTGGGTTAATGGCACTCTTCCTCTCGGTGAATATCTCATGGGGAGCATGAGAAATGGCGGTGCTCATGCTCGATATGGAATAGGGGATTGGTCATCTCTTGAATGTAGAAAGCACATGGCCAATGAAAGGGACAAGCGCAAAGCATTCCAAGAAGTTTGCAAGAATTTCAGGCCAGTTATGCATCACTTTTTCTTGGAGAGATTTTTCAAGGCACCTGAGTGGTTTGAGAAGAGACTAGCTTACACGCGAAGTGTAGCTGCTAGTTCTATGGTTGGTTACATAGTTGGCCTCGGTGATCGACATGCAATGAATATTTTAATTGATCAAGCCTCTGCAGAGGTTGTTCACATAGATCTTGGCGTTGCCTTTGAACAAGGTTTGATGCTTAAGACTCCAGAACGGGTTCCATTTAGGCTGACTAGAGACATAATTGATGGAATGGGCATAACTGGAGTAGAGGGGGTTTTCAGAAGATGTTGCGAGGAAACTCTTTCTGTTATGCGAACAAACAAAGAAGCATTGTTGACAATTGTTGAGGTTTTTATCCATGATCCTCTTTATAAGTGGGCTTTATCTCCTCTAAAAGCTTTGCAGCGTCAGAAGGAAACAGATGATGACCTGGATACAAATTTCTTGGAACCTCAAGGTGATCTTGAAGGAAATAAGGATGCCACCCGTGCACTACTGCGTGTCAAGCAGAAATTAGATGGATATGAAGAAGGTGAAATGCGGAGTGTACATGGGCAGGTTCAACAACTCATTCAAGATGCAATTGATCCAGAGCGATTGTGCCAAATGTTTCCTGGTTGGGGTGCTTGGTTATAG 3537 0.4176 MQSSKTSSYSNKSRSTPAKARDSSIVSNVLAKSASSWDKVYRFSIDYLLVAKSAVSCGSYFTSVMYVEHWCEEQFMGMTLGGPDFSHKKMLPDHIEILVSAITRINEPDSLYGILQSHKLRSQIITFEHEGNWGKALEYYDLLARSDVSKLEDSSFLSLPSDHTQAADSSSISTNVDQIMQFKPYKGLIRSLQQIGCTHVLDLYCHGLTSRNDQLQHDLEFAGMQYEAAWRAGNWDFSLPYTGANSTPLTQNIKCDHFNHNLHSCLRALQEGDLNDFSRKLKDSKQELLWSVSQTSEENTQYIYSKIMKLQMLYHLGMAWDLRWRSSQHKSSKLCLEKQNVSPEPLIPTIEQLSWLNSDWCSILERMQLHMNLLEPFISFRRVLLQILSCRDYTLQHLLQSASTLRKGYRFSQAAAALHEFKFLCVEANGESSSMYWLGRLEEAKLLRAQGQHEMAINLAMYISGNYGSNNEASDVYRLIGKWLAETRSSNSRTILEKYLKPAVSISEDVSTADKKSMERKCQTHFHLAHYADVLFRSHEERLNSSEWQAAMRLRKHKKVELEALVKRLRSSKKGEKTDYSSKIHELQKQVAMDEEEAQKVQDDRDNFLSLALEGYKHCLVTGNKYDVRVVFRLVSLWFNLSSRKNIVSSMLSTIDEVQSFKFLPLVYQIASRMGSSKDDQGTYNFQFALVSLVKKMAIDHPYHTILHLLGLANGDRIKDNQRSRSSFVVDMDKKLAAENLLHELSSYHGAIIQQTRQMVEIYIKLAEMQTRREDMDKRVTLPRELRSIPALELVPVVTATVPIDYSCQYHDGTFPYFKGLEDSAKIMNGINAPKVVECLGSDGCTYRQLAKSGDDDLRQDAVMEQFFGLVNTFLRNHRDTRKRRLNIRTYKVVPFTPSAGVLEWVNGTLPLGEYLMGSMRNGGAHARYGIGDWSSLECRKHMANERDKRKAFQEVCKNFRPVMHHFFLERFFKAPEWFEKRLAYTRSVAASSMVGYIVGLGDRHAMNILIDQASAEVVHIDLGVAFEQGLMLKTPERVPFRLTRDIIDGMGITGVEGVFRRCCEETLSVMRTNKEALLTIVEVFIHDPLYKWALSPLKALQRQKETDDDLDTNFLEPQGDLEGNKDATRALLRVKQKLDGYEEGEMRSVHGQVQQLIQDAIDPERLCQMFPGWGAWL 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00549 1178 PANTHER SERINE/THREONINE-PROTEIN KINASE ATM 5 1178 IPR038980 GO:0004674|GO:0006974
Accr12g00549 1178 ProSiteProfiles FAT domain profile. 49 715 IPR014009 -
Accr12g00549 1178 SUPERFAMILY Protein kinase-like (PK-like) 755 1105 IPR011009 -
Accr12g00549 1178 FunFam Serine/threonine-protein kinase ATM 952 1142 - -
Accr12g00549 1178 Gene3D - 747 906 - -
Accr12g00549 1178 ProSiteProfiles FATC domain profile. 1146 1178 IPR003152 GO:0005515
Accr12g00549 1178 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 1. 851 866 IPR018936 GO:0016301
Accr12g00549 1178 Pfam FATC domain 1149 1178 IPR003152 GO:0005515
Accr12g00549 1178 Coils Coil 577 604 - -
Accr12g00549 1178 Gene3D - 952 1142 IPR036940 -
Accr12g00549 1178 Pfam Phosphatidylinositol 3- and 4-kinase 854 1094 IPR000403 -
Accr12g00549 1178 CDD PIKKc_ATM 818 1095 IPR044107 GO:0004674|GO:0006281|GO:0006974
Accr12g00549 1178 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 821 1131 IPR000403 -
Accr12g00549 1178 ProSitePatterns Phosphatidylinositol 3- and 4-kinases signature 2. 988 1008 IPR018936 GO:0016301
Accr12g00549 1178 SMART pi3k_hr1_6 848 1142 IPR000403 -
Accr12g00549 1178 SMART FATC_2 1146 1178 IPR003152 GO:0005515
Accr12g00549 1178 FunFam Serine/threonine-protein kinase ATM 747 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00549 Accr-Chr12 5196217 5219150 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr12g00549 843 1117 Acyl Lipid Metabolism Gene Families AT1G60490 22.069 2.73e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00549 K04728 - pcin:129300431 2181.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00549 12 5196217 5219150 Accr12g00549 12 5196217 5219150 ECH