Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00540 ATGCAATCTTTAAGTTCTAAGGCTCTCGTGAATCTGCCTATGCCCGGTCACGGAGGATCTGATTTCTGCGATACCGAGACCCGAGTAAGGAGACATTGGGTGAATTGCAGGAACCTGAAGAGAACGAATCGAATCGTAGGTTGTATTGCAGATAGGAATGAGAATGGCAGAGGGGAGAGTCGAAGCACAAGTCAAAGCGCGAGTCCGAGCTCGTTTCTGTCTCGGAGCCACACATATGCTCTTTTAAAGCAGCAAATGGAGCTAGCTGCGAAATCCGAGGACTACAAGGAAGCTGCGAGGATTCGTGATTCGATTAAATCATTTGAAGAGGAGGAGCCAGTTTTGCGTCTGCGGAGATTAATGAAAGAAGCAATTGCTGACGAGCGGTTTGTGGATGCAGCAAAATATCGTGATGAGCTTAGAGAAATTGGTCCACACGGTCTCTTAAAATGTTCAAGCAATGCAACAACCTTGGGAATCAGGGTTCAAGTTAAAAGTGTATATATAGAGGGTAGAAGTCAGCCTTCAAAGGGGCTTTACTTTTTTGCATACAGAATCAGAATTACGAACAACTCTGACCGCCCTGTTCAACTTCTAAGAAGGCATTGGATTATAACGGATGCAAATGGGAAGACAGAACATGTCTGGGGGATGGGGGTTGTTGGTGAGCAGCCTGTAATGCTTCCCAGGGCTAGTTTTGAATACACTTCAGCATGTCCAATAAGCACACCAAATGGTAGAATGGAAGGTGACTTTGAGATGATACATGTTGATAGAATAGGCTTACCATCATTTAACGTGGCTATTGCTCCCTTCTCTCTATCTCTACTTGGAGATGATGATGGTCATTATATTTGA 858 0.4452 MQSLSSKALVNLPMPGHGGSDFCDTETRVRRHWVNCRNLKRTNRIVGCIADRNENGRGESRSTSQSASPSSFLSRSHTYALLKQQMELAAKSEDYKEAARIRDSIKSFEEEEPVLRLRRLMKEAIADERFVDAAKYRDELREIGPHGLLKCSSNATTLGIRVQVKSVYIEGRSQPSKGLYFFAYRIRITNNSDRPVQLLRRHWIITDANGKTEHVWGMGVVGEQPVMLPRASFEYTSACPISTPNGRMEGDFEMIHVDRIGLPSFNVAIAPFSLSLLGDDDGHYI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00540 285 ProSiteProfiles UVR domain profile. 76 111 IPR001943 GO:0005515
Accr12g00540 285 ProSiteProfiles UVR domain profile. 111 146 IPR001943 GO:0005515
Accr12g00540 285 Gene3D ApaG domain 150 283 IPR036767 -
Accr12g00540 285 MobiDBLite consensus disorder prediction 53 72 - -
Accr12g00540 285 PANTHER OS05G0170800 PROTEIN 32 281 - -
Accr12g00540 285 ProSiteProfiles ApaG domain profile. 154 281 IPR007474 -
Accr12g00540 285 SUPERFAMILY ApaG-like 156 275 IPR036767 -
Accr12g00540 285 SUPERFAMILY C-terminal UvrC-binding domain of UvrB 78 110 IPR036876 -
Accr12g00540 285 Pfam UvrB/uvrC motif 82 110 IPR001943 GO:0005515
Accr12g00540 285 Pfam UvrB/uvrC motif 116 143 IPR001943 GO:0005515
Accr12g00540 285 Pfam ApaG domain 172 255 IPR007474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00540 Accr-Chr12 5027646 5030022 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00540 - - qsa:O6P43_022702 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00540 12 5027646 5030022 Accr12g00540 12 5027646 5030022 ECH