Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00513 ATGGGACAGGATACAGAGGTTGGTGGTGTTTCTTTACCTTCGGGTCCAGACGCGAAGAAGAGGAGGGTCACCTATTTTTACGAACCCACCATCGGCGATTACTACTATGGCCAAGGCCATCCCATGAAACCCCATCGGATTCGCATGGCCCATAATCTCATCATCCATTACTACCTCCATCGCCGTATGGAGATCAATCGTCCTTTCCCCGCTGCCCCCGAAGACATCCGCCTTTTTCACTCCGACGAATACGTCGACTTCCTCTCTGCCGTAACGCCGGAGACCCTGGGTGAGAACACATTCTCCCGTCAGCTCAAGCGCTTCAATGTTGGCGAGGACTGTCCCGTCTTTGACGGCTTATTCAATTTTTGTCAGGCTTCTGCTGGTGGTTCCATTGGCGCCGCCGTCAAGTTAAACCGTGGTGATGCTGATATTGCCATCAACTGGGCTGGTGGTCTGCACCATGCTAAGAAATCTGAGGCTTCTGGGTTTTGTTATGTCAATGATATTGTCCTCGGCATTCTTGAGCTGCTCAAGGTTCACAGGCGTGTATTATATGTTGACATTGATGTTCACCATGGAGATGGCGTTGAGGAAGCTTTCTATACAACTGACAGAGTGATGACAGTTTCTTTTCATAAGTTTGGGGATTTTTTCCCAGGAACTGGACACGTTAAAGATGTAGGGGCGGGCCCAGGGAAGAATTATGCTTTAAATGTCCCATTGAATGATGGGATGGATGATGAGAATTTCTGTGGGTTGTTTCGCCCCGTCATCCAGAAAGTCATGGAGGTGTATCAACCTGATGCAGTGGTTCTTCAGTGTGGTGCTGATTCATTGTCTGGTGACAGACTAGGTTGCTTCAATTTGTCTGTCAAGGGTCATGCGGATTGCCTTCGTTTCATTAGATCTTTCAACGTTCCTTTGATGGTCTTGGGTGGGGGAGGATATACAATTAGGAATGTTGCTCGTTGCTGGTGTTATGAGACAGCGGTGGCTGTTGGTATTGAACCTGATAACAAGTTGCCTTACAATGAATATTTTGAGTATTTTGGCCCAGACTACACTCTTCATGTTGATCCATGTAACATGGAGAACCTTAATTCACCCAAGGATATGGAAAAAATAAGGATGACGCTATTAGAACAGCTCTCCAAACTGCCTCATGCACCCAGTGTGCCTTTTCAGACAACACCATCTACAGTTGAAGTTCCAGAAGAGGTGGAAGAGGACATGGATCGAAGACCAAAACGTCGCATATGGAGCGGTGACGATTACGATTCTGATCATGATGAAGATGTGAAGATTGGTCCAAGATACTCAAATATAAGGGATGTTCCTGATGAGATGGAAGAAGAGAAGCCAGAAGGGCCCCCATCATCATCCTGA 1389 0.4701 MGQDTEVGGVSLPSGPDAKKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIIHYYLHRRMEINRPFPAAPEDIRLFHSDEYVDFLSAVTPETLGENTFSRQLKRFNVGEDCPVFDGLFNFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHVKDVGAGPGKNYALNVPLNDGMDDENFCGLFRPVIQKVMEVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFIRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGIEPDNKLPYNEYFEYFGPDYTLHVDPCNMENLNSPKDMEKIRMTLLEQLSKLPHAPSVPFQTTPSTVEVPEEVEEDMDRRPKRRIWSGDDYDSDHDEDVKIGPRYSNIRDVPDEMEEEKPEGPPSSS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00513 462 PIRSF HDAC_I_euk 6 457 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 Pfam Histone deacetylase domain 40 331 IPR023801 -
Accr12g00513 462 PRINTS Histone deacetylase superfamily signature 183 198 IPR000286 -
Accr12g00513 462 PRINTS Histone deacetylase superfamily signature 151 174 IPR000286 -
Accr12g00513 462 PRINTS Histone deacetylase superfamily signature 268 278 IPR000286 -
Accr12g00513 462 PRINTS Histone deacetylase signature 229 242 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 PRINTS Histone deacetylase signature 42 59 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 PRINTS Histone deacetylase signature 75 93 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 PRINTS Histone deacetylase signature 129 149 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 PRINTS Histone deacetylase signature 170 186 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 PRINTS Histone deacetylase signature 246 264 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 PRINTS Histone deacetylase signature 108 125 IPR003084 GO:0004407|GO:0016575
Accr12g00513 462 SUPERFAMILY Arginase/deacetylase 21 386 IPR023696 -
Accr12g00513 462 MobiDBLite consensus disorder prediction 408 456 - -
Accr12g00513 462 PANTHER HISTONE DEACETYLASE 2-RELATED 11 344 - -
Accr12g00513 462 CDD HDAC_classI 26 333 - -
Accr12g00513 462 MobiDBLite consensus disorder prediction 389 462 - -
Accr12g00513 462 Gene3D Histone deacetylase domain 19 394 IPR037138 -
Accr12g00513 462 FunFam Histone deacetylase 19 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00513 Accr-Chr12 4795535 4799321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00513 K06067 - qsu:112035676 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00513 12 4795535 4799321 Accr12g00513 12 4795535 4799321 ECH