Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr12g00490 ATGGGTGGATTCATTTCTAAACGGCGTCGTGGGAGGCAGCATTCGTATTCAAGGACTAGTTCACATTCTTGTAGTTACCCTCCGCCTCAATCACCCTACGTGCAAGAACGCCGTCATTTGCCTCAGGAATATTGCGGGACTCCATCTCAAACCTATGGTGGTGGTCGTGCACCTGAATCAAAAAATAGGTTGGAGAGGAAGTATTTAAAGATAGATGATAACTATGTTAGCTTGGATCAGGTAACCGAGGCTCTAGCAGGTGCTGGTTTAGAGTCTTCCAATCTAATTGTTGGTATTGACTTCACGAAGAGCAATGAGTGGACAGGTACAAGATCATTCCAAAGGAGAAGCCTGCATCATATTGGTCATGAACAAAATCCGTATGAACAAGCAATATCAATCATTGGAAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGATTTGGAGATGCATCAACCCATGACCAGGAAGTTTTTAGTTTTTATCCGAATGAGAGATTTTGTCAAGGGTTTGAAGAAGTGTTGAGTCGGTACCGGGAATTGGTTCCTGAATTAAAGCTTGCAGGGCCAACATCATTTGCCCCAGTCATTGAAATGGCAATCACTATAGTTGAGCAAAGTGGTGGCCAATACCATGTCTTGTTGATAATAGCAGACGGACAGGTGACAAGAAGTGTTGATACTGAGAGAGGGCAGCTAAGCATTCAGGAAAAACAAACTGTTGAAGCTATTGTGAAAGCAAGTGAATATCCCCTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCATGGAACATGATGAAAGAATTTGATGATAACATACCAGCCCGGGTCTTTGACAATTTCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAACATGGATCCATCCAGAAAAGAAACAGAATTTGCACTTGCTGCGCTGATGGAAATACCCTCTCAGTACAAGGCAACATTGGAACTTAATATACTGGGTGCTCGTAGAGGGAAAGCTATAGACAGGGTTCCTCTTCCTCCCCCTCTGTATGGTGCTGCTGCATCTCTGAACGCCCCCGCCCCAAAAGCTTCCCGTTCAACCAGTTTTCATCCTAGTGCACCATCTGACAGTTACAGACATCATAATGCCGTTGCAAATCGTCCTGCAAGTTCTGCTTCTGATAATCATATTTGTCCAATTTGCCTCGACGAACCTAAGAATATGGCCTTTGGTTGCGGCCATCAGACTTGCTGTGAGTGCGGTAATGGTCTGGGGACGTGCCCCATTTGCAGAAGTACCATCGATACTCGAATAAGACTTTATTAG 1320 0.4356 MGGFISKRRRGRQHSYSRTSSHSCSYPPPQSPYVQERRHLPQEYCGTPSQTYGGGRAPESKNRLERKYLKIDDNYVSLDQVTEALAGAGLESSNLIVGIDFTKSNEWTGTRSFQRRSLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPNERFCQGFEEVLSRYRELVPELKLAGPTSFAPVIEMAITIVEQSGGQYHVLLIIADGQVTRSVDTERGQLSIQEKQTVEAIVKASEYPLSIILVGVGDGPWNMMKEFDDNIPARVFDNFQFVNFTEIMSKNMDPSRKETEFALAALMEIPSQYKATLELNILGARRGKAIDRVPLPPPLYGAAASLNAPAPKASRSTSFHPSAPSDSYRHHNAVANRPASSASDNHICPICLDEPKNMAFGCGHQTCCECGNGLGTCPICRSTIDTRIRLY 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr12g00490 439 MobiDBLite consensus disorder prediction 359 378 - -
Accr12g00490 439 PANTHER COPINE FAMILY PROTEIN 1 21 416 - -
Accr12g00490 439 MobiDBLite consensus disorder prediction 359 373 - -
Accr12g00490 439 SMART ring_2 396 428 IPR001841 -
Accr12g00490 439 MobiDBLite consensus disorder prediction 1 34 - -
Accr12g00490 439 SUPERFAMILY vWA-like 94 276 IPR036465 -
Accr12g00490 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 439 IPR013083 -
Accr12g00490 439 Pfam Zinc finger, C3HC4 type (RING finger) 393 434 - -
Accr12g00490 439 SUPERFAMILY RING/U-box 387 434 - -
Accr12g00490 439 Pfam Copine 117 330 IPR010734 -
Accr12g00490 439 CDD vWA_copine_like 71 321 IPR010734 -
Accr12g00490 439 ProSiteProfiles Zinc finger RING-type profile. 396 429 IPR001841 -
Accr12g00490 439 SMART VWA_4 92 295 IPR002035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr12g00490 Accr-Chr12 4495658 4498518 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr12g00490 K16280 - gmx:100809850 673.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr12g00490 12 4495658 4498518 Accr12g00490 12 4495658 4498518 ECH