Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01716 ATGGCTAGAAGATCAGCGTCACTTCTTAAACAGCTCTTCACAACATTGGAATCATCGGACACTCCCAACATCATCTCCTCATGCTCGAGATTTATTCCCTCCCGATCCGTCACTTACATGCCCCGACCTGGGGATGGGACCCCACGCGCTGTGACCCTTATTCCCGGCGATGGAATTGGACCTCTCGTTACGGGCGCTGTTGAGCAAGTGATGGAGGCGATGCACGCGCCGGTTTACTTTGAGAAGTATGACGTACACGGTGACATGCCGAGAGTGCCTCAGGAGGTGATCGATTCGATCAAGAAGAATAAGGTTTGCTTGAAGGGTGGATTGGCTACACCCATGGGCGGTGGTGTGAGCTCCTTGAACGTGCAGCTAAGGAAAGAGCTTGATCTGTACGCTTCGCTCGTGAATTGCTTTAATCTTCCTGGCTTGGTGACGAGGCACGAGAATGTTGATATTGTCGTAATTAGGGAGAATACCGAGGGAGAGTATTCTGGCCTGGAACATGAGGTCGTTCCGGGAGTCGTTGAAAGCCTTAAGGTAATCACAAAGTTTTGCTCTGAGCGTATTGCTAAATATGCTTTTGAGTATGCTTATCTAAACAACAGAAAGAAAGTGACCGCTGTCCACAAAGCAAATATTATGAAGCTAGCAGATGGTTTATTCTTGGAATCCTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCCGAGCAGTTTGATGTCATGGTAACCCCAAATCTTTATGGAAATCTAGTTTCAAATACAGCAGCAGGTATTGCTGGAGGCACTGGAGTAATGCCTGGAGGAAATGTTGGGGCTGATCACGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGATAAATTATTGGAGCAAAAGACAGCAAACCCATTAGCACTGCTTCTATCATCAGCCATGATGCTCAGACATCTTCAGTTTCCCGCATTTGCTGACCGATTGGAAACTGCTGTGAAACGAGTCATTCTTGAGGGCAAACACTGGACAAAAGACCTCGGAGGGCAAAGCACCACCCAAGAGGTTGTTGATGCAGTGTTGAATGCTTTAGACTGA 1137 0.4697 MARRSASLLKQLFTTLESSDTPNIISSCSRFIPSRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYDVHGDMPRVPQEVIDSIKKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVSNTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKLLEQKTANPLALLLSSAMMLRHLQFPAFADRLETAVKRVILEGKHWTKDLGGQSTTQEVVDAVLNALD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01716 378 NCBIfam isocitrate dehydrogenase (NAD(+)) 47 376 IPR004434 GO:0006099
Accr10g01716 378 Gene3D Isopropylmalate Dehydrogenase 37 378 - -
Accr10g01716 378 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 49 377 - -
Accr10g01716 378 SMART Iso_dh_2 50 373 IPR024084 -
Accr10g01716 378 Pfam Isocitrate/isopropylmalate dehydrogenase 51 373 IPR024084 -
Accr10g01716 378 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 38 377 - -
Accr10g01716 378 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 39 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01716 Accr-Chr10 41286392 41289654 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01716 K00030 - qsa:O6P43_033532 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g01716 10 41286392 41289654 Accr10g01716 10 41286392 41289654 ECH