Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01367 ATGAGAGAATTTAGTTTCAGAAGCCTCACATTTATGGTTTTGGTTGCATTTCTAGTGTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCAAAACAGAGATGTGTCAGCTCAGTACAAGAAGAAAGGAAAGAGCTATGGCAATAAACACAACAACCACCATGGAGGAGGAGGAGGATCACATTCTAAACCAAAATCTCCTCCACATTATAAAATTACTCCATCACCACCAGCTTCATCACTACCACCACCACAGCCACCAATTCCTAAGCCAAAGAAAGGTACTCCTTCAGCTTCACCGCCAAAAGGTTACAATGTGGGTCGTTCTTCCACCTTCAATGTCCTAGATTTTGGAGCTAAGGGTGATGGAAAAACAGATGATACAAAGGCATTTGAAGCTGCATGGGCAGCCGCATGTAAGGTACAAGCATCAACCATGCTCATCCCAGCAGATTACGTCTTCTTCGTGGGACCCATTTCCTTCTCTGGTCCATACTGCAAACCCAACATAGTTTTTCAGCTTGATGGAACAATTATTGCCCCAACAAATCCCCAGGCGTGGGGGAGAGGATTGTTGCAGTGGTTGGATTTCACAAAGCTGGTTGGAATTACCATTCAAGGAAAGGGAATCATTGATGGAAGAGGCTCGGTCTGGTGGCAAGACCAACCATTTGATTATCCCATTGATGATGAAGAAAAGCTCATAGTCCCACTAAACAACTCAGTGAAGAGTCCTCCACCAATGCCAGTTCAAAGTGAGCTGGGAGGGAAAATGCCATTCGTCAAGCCAACTGCACTACGGTTTTATGGCAGTTTTAATCCAACAATCACAGGCATAACAATTCAAAATAGCCAACAGTGTCACCTCAAGTTTGATAATTGCAATGGCGTCCTGGTCCATGATGTGAGCATTTCATCTCCTGGTGACAGTCCCAATACAGATGGAATTCACCTTCAGAATTCCAAAGATGTTTTGATTCACAGCAGCAAATTAGCTTGTGGGGATGACTGTATTTCCATACAAACTGGATGCTCAAATGTATATGTGCATAATGTGAACTGCGGTCCAGGGCATGGAATCAGCATTGGAAGTTTAGGGAAGGATAACACAAGAGCCTGTGTCTCAAACATTACTGTCAGAGATGTCAATATGCACAACACAATGAATGGTGTCAGAATCAAAACGTGGCAGGGTGGATCAGGATCTGTACAGGGGGTCTTCTTCTCAAACATACAAGTTTCTGAAGTCCAACTCCCAATTGTGATAGACCAATACTATTGTGATAAAAGGACATGCAAAAACCAGACATCAGCTGTGGTACTTCAAGGAATCAACTACGAAAGAATAAGGGGAACATACACAGTCAAGCCCGTGCATTTTGCCTGTAGTGATAGCCTGCCATGTGCAGATGTTACTTTAACCTCCATAGAGCTAAAACCACTTCAAGAACAATACCATCTATATGATCCATTCTGCTGGCAGACTTTTGGAGAATTAAGAACTCCAACAACTCCACCAATTGCTTGTCTGCAGATTGGGAAGCCATCCAGCAATCGGGTTCAGATCGATCATGACTTGTGTTGA 1602 0.4357 MREFSFRSLTFMVLVAFLVWSSNFEACIARRGKHWRQNRDVSAQYKKKGKSYGNKHNNHHGGGGGSHSKPKSPPHYKITPSPPASSLPPPQPPIPKPKKGTPSASPPKGYNVGRSSTFNVLDFGAKGDGKTDDTKAFEAAWAAACKVQASTMLIPADYVFFVGPISFSGPYCKPNIVFQLDGTIIAPTNPQAWGRGLLQWLDFTKLVGITIQGKGIIDGRGSVWWQDQPFDYPIDDEEKLIVPLNNSVKSPPPMPVQSELGGKMPFVKPTALRFYGSFNPTITGITIQNSQQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVFFSNIQVSEVQLPIVIDQYYCDKRTCKNQTSAVVLQGINYERIRGTYTVKPVHFACSDSLPCADVTLTSIELKPLQEQYHLYDPFCWQTFGELRTPTTPPIACLQIGKPSSNRVQIDHDLC 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01367 533 ProSitePatterns Polygalacturonase active site. 357 370 IPR000743 GO:0004650|GO:0005975
Accr10g01367 533 SUPERFAMILY Pectin lyase-like 114 526 IPR011050 -
Accr10g01367 533 Gene3D - 110 523 IPR012334 -
Accr10g01367 533 FunFam polygalacturonase At1g48100 107 518 - -
Accr10g01367 533 MobiDBLite consensus disorder prediction 33 113 - -
Accr10g01367 533 PANTHER - 116 502 - -
Accr10g01367 533 Pfam Glycosyl hydrolases family 28 147 228 IPR000743 GO:0004650|GO:0005975
Accr10g01367 533 Pfam Glycosyl hydrolases family 28 268 485 IPR000743 GO:0004650|GO:0005975
Accr10g01367 533 SMART pbh1 300 326 IPR006626 -
Accr10g01367 533 SMART pbh1 350 370 IPR006626 -
Accr10g01367 533 SMART pbh1 380 401 IPR006626 -
Accr10g01367 533 SMART pbh1 277 297 IPR006626 -
Accr10g01367 533 SMART pbh1 327 348 IPR006626 -
Accr10g01367 533 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01367 Accr-Chr10 36813256 36817742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01367 2 533 Glycoside Hydrolase AT1G60590 66.728 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01367 - - gmx:100783813 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g01367 10 36813256 36817742 Accr10g01367 10 36813256 36817742 ECH