Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00340 ATGGCTTTAACACTTCGTTCTTCAAACTCCTTCTTTTCTCAAATAGAAACCCAAGTTTCCAAACCTCGTGAAGGTTACTTGTCCTCCACAGTTTGCTTTGCATGGATCAAGTCATCACCATCATCATTCCGTCTCAGAGCAACAAGTCATGTTACCGTCGCCGGCACCGGCAACAAGGTAACGGGCTTAGAAGCAAGCAAAGAGGAGCTGCATCATCCCGCATTGGTGGCTCCTCATAAGCACGATGATTCAATGAAAGTGCCAGTGTTTGTGATGCTGCCATTAGACACGGTGACGATGGGAGGGACTCTGAACAAGGCACGAGCCATGAACGCTAGTCTAATGGCCCTTAAAACTGCAGGAGTTGAAGGAGTCATGGTGGATGCTTGGTGGGGCTTAGTTGAAAAAGATGGCCCTATGAGCTATAACTGGGAAGCTTACGCTGAACTTGTTCACATGGTACAAAAACATGGATTAAAGCTTCAAGTCGTCATGTCCTTTCATCAATGTGGAGGAAACGTCGGCGACTCTTGCAGTATTCCTTTACCTCCTTGGGTGCTTGAAGAAATCAGCAAGAATCCTGACCTGGTTTACACAGACAGATCTGGGAGGAGAAATCCAGAGTATATTTCTTTGGGGTGTGATTCGATTCCTGTTCTAAGAGGAAGGACTCCTCTTCAGGTGTACTCTGACTTTATGACTAGTTTCCGTGACAGATTCAGAGATTACTTGGGCAGTGTTATCCAAGAAATTCAAGTAGGGATGGGTCCTTGTGGAGAACTCAGATATCCATCTTATCCAGAAAGCAATGGAACTTGGAGGTTTCCAGGAATTGGTGAATTCCAGTGCTACGACAAGTATATGAGGGCATCGTTGGAAGCAGCAGCAGAGTCGATTGGGAACAGAGATTGGGGGAGAAGTGGGCCCCACGATTCTGGCCAATACAATCAATTCCCGGAAGATACGGGATTCTTCAGGCGTGAAGGAACATGGAACTCCGATTACGGAAGCTTCTTCCTCGCCTGGTACTCGAACAAATTGATCGAACACGGTGACCGAATCCTCGAATCCGCCGGCCGGATATTCCAATCGACCGGAGCCAAACTCTCAGCGAAAATCGCCGGCATCCATTGGCATTACAATACTAGATCGCATGCCGCCGAGCTAACCGCCGGCTACTACAACACCCGATCCCGCGACGGCTACCTTCCGATAGCACAAATGCTAGCGAAACACGGAGCGATCTTAAACTTCACGTGTATGGAGATGAAGGATTCGCAGCAACCTCATCACGCGAGTTGCTCGCCGGAGGGACTGGTTCGTCAGGTGAAGATGACGGCGAAGACGGCGAGAGTACAACTGGCAGGCGAAAACGCGTTGGAAAGATACGATGGGGATGGGTACGGACAGGTAATGGAAACGAGTAGATCAGATTGCGGGAACGGATTGGTGGCGTTCACGTATCTGAGGATGAACAAGAGGTTGTTCGAAGAGCAAAATTGGCGGCAATTTGCGAATTTTGTGAGGAGCATGTCGGAAGGTGGGCGGAGACAGAGACTTCCCGATTATGATACGCGTGGGAGTGATCTGTACGTTGCACATATCAAAGGGATTCACAAGCACAAGCAGGTTCAAGAGGAAGCTCTGGTGTGA 1653 0.4894 MALTLRSSNSFFSQIETQVSKPREGYLSSTVCFAWIKSSPSSFRLRATSHVTVAGTGNKVTGLEASKEELHHPALVAPHKHDDSMKVPVFVMLPLDTVTMGGTLNKARAMNASLMALKTAGVEGVMVDAWWGLVEKDGPMSYNWEAYAELVHMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGRRNPEYISLGCDSIPVLRGRTPLQVYSDFMTSFRDRFRDYLGSVIQEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEAAAESIGNRDWGRSGPHDSGQYNQFPEDTGFFRREGTWNSDYGSFFLAWYSNKLIEHGDRILESAGRIFQSTGAKLSAKIAGIHWHYNTRSHAAELTAGYYNTRSRDGYLPIAQMLAKHGAILNFTCMEMKDSQQPHHASCSPEGLVRQVKMTAKTARVQLAGENALERYDGDGYGQVMETSRSDCGNGLVAFTYLRMNKRLFEEQNWRQFANFVRSMSEGGRRQRLPDYDTRGSDLYVAHIKGIHKHKQVQEEALV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00340 550 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 46 519 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 Gene3D Glycosidases 80 544 - -
Accr10g00340 550 Pfam Glycosyl hydrolase family 14 90 507 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 SUPERFAMILY (Trans)glycosidases 86 514 IPR017853 -
Accr10g00340 550 ProSitePatterns Beta-amylase active site 1. 168 176 IPR018238 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Plant beta-amylase signature 487 501 IPR001371 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Plant beta-amylase signature 405 415 IPR001371 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Plant beta-amylase signature 246 255 IPR001371 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 256 278 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 402 425 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 142 160 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 331 350 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 439 461 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 121 135 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 367 383 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 384 395 IPR001554 GO:0000272|GO:0016161
Accr10g00340 550 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 164 185 IPR001554 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00340 Accr-Chr10 5540365 5542356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00340 1 550 Glycoside Hydrolase AT4G17090 69.369 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00340 K01177 - gmx:100786079 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00340 10 5540365 5542356 Accr10g00340 10 5540365 5542356 ECH