Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g00062 ATGGCGTCCACCACTAAGTGGTTTTCTAACACAGGTCTTCGACTAAGTCTTGGTTGCTCAAAGTCAAAATCCAGATCAAGATCCTCCAACTCCTCAAACTCTGCCATGTTATCACCACCTTCTGAAACACCAAACCCTGTTTCCAGAGAGGATGAACTGAGGGAGGTGTTTCGTCGTTTCGATGGCAACGGCGACGGCAAGATATCGGCCCAAGAACTGCGGTCGTATTTCGGGTCCATTGGGGAGAACTTGACCATCGAAGAGGCGGAAGGGGTGATCCGTGACCTTGATTCAGACGGAGACAGTCTTCTGAATATGGAAGATTTCATGAAGCTGATGAAGAAGGACAAAGATGACGAGGATCTGAAGAAGGCCTTTGAGATGTACGAGTGGGAAAAAGGTTCGGGTTGTATTACCCCAAAAGGGTTGCAGAGGATGCTCCATCGTCTCGGAGACGACAAGTCGTACGATGAGTGTGTGGCTATGATAGGTGCCTTCGATGTAGATCGCAACGGAGTGTTAGATTTCAATGAATTCCTCCAAATGATGGCCTAA 555 0.4811 MASTTKWFSNTGLRLSLGCSKSKSRSRSSNSSNSAMLSPPSETPNPVSREDELREVFRRFDGNGDGKISAQELRSYFGSIGENLTIEEAEGVIRDLDSDGDSLLNMEDFMKLMKKDKDDEDLKKAFEMYEWEKGSGCITPKGLQRMLHRLGDDKSYDECVAMIGAFDVDRNGVLDFNEFLQMMA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g00062 184 CDD EFh 52 109 IPR002048 GO:0005509
Accr10g00062 184 Pfam EF-hand domain pair 51 114 IPR002048 GO:0005509
Accr10g00062 184 PANTHER CALCIUM BINDING PROTEIN 48 113 - -
Accr10g00062 184 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Accr10g00062 184 MobiDBLite consensus disorder prediction 17 45 - -
Accr10g00062 184 MobiDBLite consensus disorder prediction 17 50 - -
Accr10g00062 184 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Accr10g00062 184 FunFam Calmodulin A 41 117 - -
Accr10g00062 184 SMART efh_1 158 184 IPR002048 GO:0005509
Accr10g00062 184 SMART efh_1 52 80 IPR002048 GO:0005509
Accr10g00062 184 SMART efh_1 88 116 IPR002048 GO:0005509
Accr10g00062 184 Pfam EF-hand domain pair 135 183 IPR002048 GO:0005509
Accr10g00062 184 SUPERFAMILY EF-hand 40 183 IPR011992 -
Accr10g00062 184 ProSiteProfiles EF-hand calcium-binding domain profile. 154 184 IPR002048 GO:0005509
Accr10g00062 184 ProSitePatterns EF-hand calcium-binding domain. 167 179 IPR018247 -
Accr10g00062 184 Gene3D - 17 116 - -
Accr10g00062 184 Gene3D - 117 184 - -
Accr10g00062 184 CDD EFh 134 184 IPR002048 GO:0005509
Accr10g00062 184 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g00062 Accr-Chr10 1102899 1103453 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g00062 2 184 EF-hand Containing Proteins AT3G50770 48.241 1.26e-55 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g00062 K13448 - cave:132187760 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr10g00062 10 1102899 1103453 Accr10g00062 10 1102899 1103453 ECH